PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00032g04016.1
Organism
Petunia inflata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family C3H
Protein Properties Length: 472aa    MW: 52215.1 Da    PI: 7.7452
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00032g04016.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.22.8e-08128148526
                               --SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                               +C+ f++ G C++Gd C +aHg
  Peinf101Scf00032g04016.1 128 PCPEFHK-GACQRGDLCEYAHG 148
                               8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.037123149IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5128148IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.014128150IPR000571Zinc finger, CCCH-type
SMARTSM0035626158181IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.578158182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MESFSPLKQK ILGGITTNTK NFHRNAPFET DYGHLMVFII YVKVHSNLLK FIEIFPNRIG  60
TLFQLIETLL LLNPVLVSQV LLIHHPDQLF PSKINSHPRP PSIPLHRLPP SENVRRRDPI  120
KYCYSCVPCP EFHKGACQRG DLCEYAHGVF ECWLHPAQYR TRVCKYGIGC KRKVCFFAHM  180
HEELRPLYVS TGSAVASPCG NSAAVNSMDI ASDMGLIPDF PFPVSVMSPS PLTPPMSPSA  240
SGISSMGCPQ QYVRALHLPG RFLHSSHLQS SLNARYIPAA DLRSHPEFDV QQQQIPNQLS  300
YLSQPNMNSN SLNHSARPMT LNHANLENLF SAESSSPSYS DQALAQAGFS PTHRSDACSQ  360
FQQQQTLLSP INTDFSPKHV QQQVRSLSSR KLGSNGTSPG NPDWTVNTGE FGGLSRSSLF  420
EFANNGEGPN VSWVQSVLEE YPREMMKDER VPHVSGPTCA GADLGEGSTS SS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016543711.11e-165PREDICTED: zinc finger CCCH domain-containing protein 30-like
SwissprotP937551e-89C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2G2VVY71e-166A0A2G2VVY7_CAPBA; Zinc finger CCCH domain-containing protein 56
STRINGSolyc10g080260.1.11e-154(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA2530022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12850.14e-84CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]