PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00030g00005.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TALE | ||||||||
Protein Properties | Length: 558aa MW: 62158.4 Da PI: 6.2695 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 20.9 | 6.3e-07 | 484 | 515 | 23 | 54 |
SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 23 rypsaeereeLAkklgLterqVkvWFqNrRak 54 r +s +e++ LA k gLt +qV++WF N R + Peinf101Scf00030g00005.1 484 RSVSDAEKQLLAVKSGLTRSQVSNWFINARVR 515 678999************************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 3.3E-21 | 288 | 431 | IPR006563 | POX domain |
Pfam | PF07526 | 1.7E-26 | 294 | 430 | IPR006563 | POX domain |
SMART | SM00389 | 0.0025 | 456 | 523 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.15E-9 | 486 | 528 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.94E-7 | 487 | 520 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 8.2E-14 | 487 | 525 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 3.9E-8 | 487 | 515 | IPR008422 | Homeobox KN domain |
PROSITE profile | PS50071 | 9.118 | 487 | 519 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008285 | Biological Process | negative regulation of cell proliferation | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010227 | Biological Process | floral organ abscission | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0010371 | Biological Process | regulation of gibberellin biosynthetic process | ||||
GO:0090470 | Biological Process | shoot organ boundary specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 558 aa Download sequence Send to blast |
MAEPHPFLDE NLLHTASVPI SFSNIVGLNY QNHTMEEQNH IIDGHGIRIP FMLQGESINS 60 SQACQSLPNF PRAIETGAIH DVLPGRNRIK EFSLSTSYPI SNPYAEDQYM EGVPISAVAL 120 ANLLAARNAM LENPENLAVL APLSQSVEGQ KIDGPDYPTM LNPSFGSYRN YEFDGVPEIA 180 GTNAGPTGSQ PFQFTENVNS NTWFSSETAS LSSDSPSGSS SRFSNELSLS LTTSQSAVVC 240 GTTIRNQGSD ISCTGVTNHA FPQRRFDSDL TPCNSRNMSS NFGSNKPVHL SQFLTGSRYL 300 HVMQEILSEI AQLSLQNHNM VGYRGNGTAY GANTSFTLSP DTGRGNAALS SDDLPYGDNR 360 INAQMDCEAK KKHLVALLQV VDDQYNQCLD EIHMVISAFH AVTELDPRIH ARFALQTISS 420 LYKNLRERIS NYILAMGEQF DKGGERGGVE NSFETSFIQK QWALQQLKRK DHQLWRPQRG 480 LPERSVSDAE KQLLAVKSGL TRSQVSNWFI NARVRLWKPM IEEMYAEMNR RKIRTGNEDE 540 ASNRRNHKII ENHIFTMN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in the signal transduction pathway downstream of the COP1 gene. Controls floral competency as a specific activator of FLC expression. Is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:17908157}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. In etiolated seedlings, maximally expressed after 3 days of illumination. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006361000.2 | 0.0 | PREDICTED: homeobox protein ATH1 | ||||
Swissprot | P48731 | 1e-84 | ATH1_ARATH; Homeobox protein ATH1 | ||||
TrEMBL | A0A1S4BBL0 | 0.0 | A0A1S4BBL0_TOBAC; homeobox protein ATH1-like | ||||
STRING | Solyc08g065420.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8261 | 23 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32980.1 | 2e-84 | homeobox gene 1 |
Publications ? help Back to Top | |||
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