PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00028g00014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | bHLH | ||||||||
Protein Properties | Length: 463aa MW: 50798.6 Da PI: 4.8856 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.3 | 8.5e-11 | 400 | 445 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + a++L A +YIk+L+ Peinf101Scf00028g00014.1 400 SIAERVRRTRISERMRKLQELVPNM----DKQTNTADMLDFAADYIKELE 445 689*********************7....688***************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.519 | 394 | 444 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.76E-15 | 397 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.58E-11 | 398 | 449 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.0E-13 | 399 | 455 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-12 | 400 | 450 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.1E-7 | 400 | 445 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MDNRSHQQQQ MTSGLTRYRS APSSYFASLL NSNPASVAGA GGGNCGYARD DFDQLLNSRA 60 SNTENIKQVF DRFVANIDPQ DSNPNGLIGD TQQIQKKQQN PICNMNVRSE VVAPTKQEHE 120 AQQQQQMNYQ CQAQQSHDSQ FIAPVKQEIT QEALQQQQNC DYSLASQMNY QTQAQQNDNS 180 AYLDSAIDNF NRFLGSVDSK MDGGVGAGCG NSNLTRYNSS PAGFFAQVNI ENEYGAMRGI 240 GSYGTGSNAA AEASFSTSNR FSNQIGLSSG QPPPSGLLAP ISDFGAKGME DSRPGDESFG 300 KGHKNGESYI AGFPMPSWDE SQFLTDDFLQ VPEDNETGQF SNVNASDNQS SEGRARPPAL 360 LSHLSLPQTT AELSAMEKLL QDSVPCKVRA KRGFATHPRS IAERVRRTRI SERMRKLQEL 420 VPNMDKQTNT ADMLDFAADY IKELETQVKT LSDTRSKCTC SNE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006365809.1 | 0.0 | PREDICTED: transcription factor bHLH128-like | ||||
Refseq | XP_006365810.1 | 0.0 | PREDICTED: transcription factor bHLH128-like | ||||
TrEMBL | M1C7B5 | 0.0 | M1C7B5_SOLTU; Uncharacterized protein | ||||
STRING | Solyc12g100140.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4605 | 22 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51140.1 | 3e-56 | bHLH family protein |