PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Scf00022g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 23485 Da PI: 4.4728 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.4 | 1.8e-09 | 14 | 44 | 1 | 31 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartm 31 rg+WT eEd ll++++ +G g+W++ a++ Peinf101Scf00022g00013.1 14 RGPWTLEEDNLLIHYISSHGEGRWNALAKCA 44 89**************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.119 | 9 | 58 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.51E-8 | 10 | 51 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 8.0E-11 | 12 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.5E-8 | 14 | 43 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.15E-6 | 16 | 51 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MNSCSHEDEF ELRRGPWTLE EDNLLIHYIS SHGEGRWNAL AKCAAIKSLW MPRLLEKMEQ 60 QCSSSISSPA SSSTKISIEK QSPPLPSPLI NHQEPYKSHD NTCNYDNEKT NSLEHPRNYL 120 SNSKSMLKLP HEMTEDPTLY NNLVQEEGYH VESFNQQPDF SSQEMSISEC EMGETNWFTD 180 EMGGSLWNMD EFWQFRKLGD VDI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 4e-35 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009626235.1 | 8e-54 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A1S3ZW05 | 2e-52 | A0A1S3ZW05_TOBAC; transcription factor MYB108-like | ||||
STRING | XP_009626235.1 | 3e-53 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49620.1 | 6e-15 | myb domain protein 78 |