PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13694859g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | TCP | ||||||||
Protein Properties | Length: 341aa MW: 38603.8 Da PI: 7.7891 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 131.2 | 9.9e-41 | 119 | 265 | 3 | 131 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssasec. 73 kkdrhski T++g+RdRR+Rls+++a++fF Lqd LGfdk+skt+eWLl+++k a+kel + s+ss sec Peinf101Ctg13694859g00003.1 119 SKKDRHSKITTAQGPRDRRMRLSLDVARKFFNLQDLLGFDKASKTVEWLLNKSKSAVKELEEGtstaniggaiSASSTSECe 200 79**********************************************************9996777777766555557776 PP TCP 74 .......eaesssssasnsssg.......kaaksaakskksqksaasalnlakesrakarararertrekmr 131 e++++ + +++++++ ++++ + a ++ +akesr++ararar rt +k Peinf101Ctg13694859g00003.1 201 visgiidESATNDI-------QkeqpiinSKKEKKKAKSSRIRAAINHPVVAKESRKEARARARARTLKKSL 265 66554322222222.......13334553333333344444444445888899*************998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-43 | 119 | 263 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 34.899 | 120 | 178 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 8.856 | 246 | 263 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MYPSNNYSPI SSSSNLYHMP SPSSIQYEHE LFQYFHDHHL LQPQQLQFLT TTADHHQNLD 60 DTNMAEEYSN KDTVISSTTT NNNNNLEEDE KGCKNKKVHD MSSSTITSTI NKNKINKSSK 120 KDRHSKITTA QGPRDRRMRL SLDVARKFFN LQDLLGFDKA SKTVEWLLNK SKSAVKELEE 180 GTSTANIGGA ISASSTSECE VISGIIDESA TNDIQKEQPI INSKKEKKKA KSSRIRAAIN 240 HPVVAKESRK EARARARART LKKSLNIGDE SKLCNEADTL RSWKPYEESG SQGYTNKENV 300 VDDPDLVVTT GNWSPFTIIN FHHNTEISHE HQFTNFQLWE A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ400106 | 0.0 | JQ400106.1 Petunia x hybrida putative transcription factor (TCP3) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016506815.1 | 1e-111 | PREDICTED: transcription factor DICHOTOMA-like | ||||
TrEMBL | G0ZGI8 | 0.0 | G0ZGI8_PETHY; Putative transcription factor (Fragment) | ||||
STRING | XP_009592164.1 | 1e-108 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2482 | 22 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 6e-29 | TCP domain protein 12 |