PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13653255g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | C3H | ||||||||
Protein Properties | Length: 258aa MW: 27529.1 Da PI: 8.4973 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.7 | 8.3e-08 | 56 | 81 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + C++Gd+C+FaHg+ Peinf101Ctg13653255g00001.1 56 KTRLCSKYNSPEGCRFGDKCHFAHGE 81 8***********************96 PP | |||||||
2 | zf-CCCH | 34.5 | 3.4e-11 | 220 | 243 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt++C +fa+ G C +G++C+FaHg Peinf101Ctg13653255g00001.1 220 KTKICENFAK-GSCTFGEKCHFAHG 243 89********.*************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 8.427 | 1 | 17 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 2.6 | 4 | 14 | No hit | No description |
Gene3D | G3DSA:4.10.1000.10 | 1.5E-13 | 52 | 84 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.28E-8 | 53 | 85 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.013 | 54 | 81 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.507 | 54 | 82 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.0E-6 | 56 | 81 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 7.31E-15 | 117 | 196 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.0E-10 | 124 | 194 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.299 | 125 | 189 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 9.3E-15 | 125 | 194 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 1.7E-10 | 127 | 191 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 5.76E-14 | 127 | 189 | No hit | No description |
SuperFamily | SSF90229 | 1.7E-8 | 217 | 248 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-13 | 217 | 248 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.098 | 218 | 245 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-6 | 218 | 244 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-8 | 220 | 243 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
TSGCPFGEGC HFLHYVPGGL KAVTQMLGSN PALPAASRNS AAPPSFPDGS SPPAVKTRLC 60 SKYNSPEGCR FGDKCHFAHG EWELGKRTAP LHEESHGMFQ MHGMYGNRPE TTPAGFGAAA 120 SFGSSATAKI SVDASLAGPI IGKGGVNSKQ ICHMTGAKLS IRDHESDPNL KNIELEGTID 180 QIEQASRMVR ELILSVRTAA APQMRNPGSR PTSNYKTKIK TKICENFAKG SCTFGEKCHF 240 AHGAEELREF GANKPQID |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006356452.1 | 1e-150 | PREDICTED: zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 4e-88 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A1S4A4V5 | 1e-148 | A0A1S4A4V5_TOBAC; zinc finger CCCH domain-containing protein 14-like | ||||
TrEMBL | A0A1U7YM22 | 1e-148 | A0A1U7YM22_NICSY; zinc finger CCCH domain-containing protein 14-like | ||||
STRING | XP_009803026.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-52 | C3H family protein |