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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13455094g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | SRS | ||||||||
Protein Properties | Length: 246aa MW: 26279.7 Da PI: 8.9379 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 119.4 | 4.8e-37 | 141 | 242 | 4 | 103 |
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrelkskkq 83 +++CqdCGnqakkdC h+RCRtCCksrgfdC+thvkstWvpaa+rrerq + + + aa s+ +++++k++r +s+++ Peinf101Ctg13455094g00001.1 141 SSTTCQDCGNQAKKDCPHKRCRTCCKSRGFDCTTHVKSTWVPAARRRERQLMGTGTDVVAAGSSsqSTSSAKKPRLVNSQAT 222 5689*********************************************998877766655544347788899999999999 PP DUF702 84 salsstklssaeskkelets 103 +++s+t++s+++++++++ts Peinf101Ctg13455094g00001.1 223 TTASHTSTSNTTPQRSFDTS 242 *************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 3.0E-32 | 142 | 235 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 6.7E-27 | 144 | 186 | IPR006510 | Zinc finger, lateral root primordium type 1 |
Sequence ? help Back to Top |
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Protein Sequence Length: 246 aa Download sequence Send to blast |
MQINYGLPHE MGMFVVTPAS FHHHHQENSI NFDNLHHHHQ SLNGSNISTS PTTNTSLGVG 60 VGVGVIPLLT ATPLTNMVSF DDHQDLVSRN RGGTNDHSGG SGFQFFSNQQ QNSPNYNKTS 120 NIPSNFTSGG GNIGGGSISS SSTTCQDCGN QAKKDCPHKR CRTCCKSRGF DCTTHVKSTW 180 VPAARRRERQ LMGTGTDVVA AGSSSQSTSS AKKPRLVNSQ ATTTASHTST SNTTPQRSFD 240 TSSSHQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975450 | 3e-67 | HG975450.1 Solanum pennellii chromosome ch11, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009796421.1 | 1e-98 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 | ||||
Refseq | XP_016458851.1 | 1e-98 | PREDICTED: protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | A0A1S3Z339 | 3e-97 | A0A1S3Z339_TOBAC; protein LATERAL ROOT PRIMORDIUM 1-like | ||||
TrEMBL | A0A1U7Y389 | 3e-97 | A0A1U7Y389_NICSY; protein LATERAL ROOT PRIMORDIUM 1 | ||||
STRING | XP_009796421.1 | 6e-98 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7655 | 23 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G12330.3 | 1e-30 | Lateral root primordium (LRP) protein-related |