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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13404484g00003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | MYB_related | ||||||||
Protein Properties | Length: 116aa MW: 13098.9 Da PI: 8.2461 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.9 | 1.1e-08 | 41 | 90 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 r +++ E e lv+av+qlG+g+W+ + + +Rt ++k++w ++ Peinf101Ctg13404484g00003.1 41 RRPFSVSEVEALVEAVEQLGTGRWRDVKMRAFdcaDHRTYVDLKDKWKTL 90 67899*********************9766668**9***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.441 | 36 | 95 | IPR017930 | Myb domain |
SMART | SM00717 | 9.9E-8 | 40 | 93 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-11 | 41 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.6E-6 | 41 | 90 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.16E-15 | 42 | 114 | IPR009057 | Homeodomain-like |
CDD | cd11660 | 7.73E-18 | 42 | 92 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
DEAVPDCKAL AIVPPVNEEA VAVVSANHKS RRSELSQRRT RRPFSVSEVE ALVEAVEQLG 60 TGRWRDVKMR AFDCADHRTY VDLKDKWKTL VHTASIAPQQ RRGEPVPQEL LDRVLA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 4e-56 | 27 | 116 | 3 | 92 | Telomere binding protein TBP1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds specifically to the plant telomeric double-stranded DNA sequences. At least 2 repeats of telomeric sequences are required for binding. Induces DNA bending. {ECO:0000269|PubMed:15688221}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785792.1 | 5e-67 | PREDICTED: telomere repeat-binding protein 3-like isoform X1 | ||||
Refseq | XP_009785793.1 | 4e-67 | PREDICTED: telomere repeat-binding protein 3-like isoform X2 | ||||
Refseq | XP_016481145.1 | 5e-67 | PREDICTED: LOW QUALITY PROTEIN: telomere repeat-binding protein 3-like | ||||
Refseq | XP_019238740.1 | 6e-67 | PREDICTED: telomere repeat-binding protein 4-like | ||||
Swissprot | Q9C7B1 | 4e-53 | TRP3_ARATH; Telomere repeat-binding protein 3 | ||||
TrEMBL | A0A1J6KI46 | 1e-65 | A0A1J6KI46_NICAT; Telomere repeat-binding protein 3 | ||||
TrEMBL | A0A1S4AX00 | 1e-65 | A0A1S4AX00_TOBAC; LOW QUALITY PROTEIN: telomere repeat-binding protein 3-like | ||||
TrEMBL | A0A1U7X0V7 | 1e-65 | A0A1U7X0V7_NICSY; telomere repeat-binding protein 3-like isoform X1 | ||||
TrEMBL | A0A1U7X4K3 | 9e-66 | A0A1U7X4K3_NICSY; telomere repeat-binding protein 3-like isoform X2 | ||||
STRING | XP_009785792.1 | 2e-66 | (Nicotiana sylvestris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07540.1 | 9e-32 | TRF-like 2 |
Publications ? help Back to Top | |||
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