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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg13284910g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YA | ||||||||
Protein Properties | Length: 115aa MW: 12391.3 Da PI: 9.9987 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 42.7 | 1.8e-13 | 7 | 29 | 36 | 58 |
CBFB_NFYA 36 kpylheSRhkhAlrRpRgsgGrF 58 +pylheSRh+hA+rR+R+sgGrF Peinf101Ctg13284910g00001.1 7 QPYLHESRHQHAMRRARASGGRF 29 89********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51152 | 18.213 | 1 | 32 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 5.2E-11 | 7 | 29 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 115 aa Download sequence Send to blast |
SPVLILQPYL HESRHQHAMR RARASGGRFA RKTDGDASKG TGSGSAFSSQ SVSSSGSEPL 60 QFNAADVQKR QENGRLAELQ HSYSNGSSYG NQSSFQESKD ESQSAESREG GSLRK |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM489759 | 1e-172 | AM489759.1 Petunia x hybrida partial mRNA for YA4 (nf-YA gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019251747.1 | 3e-51 | PREDICTED: nuclear transcription factor Y subunit A-1-like | ||||
TrEMBL | A5PGU7 | 6e-69 | A5PGU7_PETHY; YA4 (Fragment) | ||||
STRING | XP_009624416.1 | 1e-44 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3111 | 22 | 48 |