PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peinf101Ctg13051599g00001.1

Organism

Petunia inflata

Taxonomic ID

212142

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia

Family

LBD

Protein Properties

Length: 99aa MW: 11104.5 Da PI: 4.0458

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peinf101Ctg13051599g00001.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	41.9	2.8e-13	1	40	61	100
DUF260 61 lvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +vyeA+ar+rdPvyG++g i +lq+q+++l+a+la++++e Peinf101Ctg13051599g00001.1 1 MVYEANARLRDPVYGCAGAICQLQKQVNELQAQLAKAQAE 40 69**********************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	9.514	1	41	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.5E-11	1	38	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 99 aa Download sequence Send to blast
MVYEANARLR DPVYGCAGAI CQLQKQVNEL QAQLAKAQAE VVNMQCQQAN LMALICMEID 60 QSPQSSPPPQ QSLDNFTNNI PHFFDDNNNF GSAWETLWT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975445	9e-47	HG975445.1 Solanum pennellii chromosome ch06, complete genome.
GenBank	HG975518	9e-47	HG975518.1 Solanum lycopersicum chromosome ch06, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009593636.1	6e-53	PREDICTED: LOB domain-containing protein 1-like
Refseq	XP_016487519.1	6e-53	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	1e-25	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A1S4BF48	1e-51	A0A1S4BF48_TOBAC; LOB domain-containing protein 1-like
STRING	XP_009593636.1	2e-52	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	2e-19	LOB domain-containing protein 1