PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peinf101Ctg12770835g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
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Family | NF-YA | ||||||||
Protein Properties | Length: 102aa MW: 11510.9 Da PI: 7.63 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 44.6 | 4.8e-14 | 15 | 40 | 33 | 58 |
CBFB_NFYA 33 ksrkpylheSRhkhAlrRpRgsgGrF 58 ++ +pylheSRh+hAl+R+Rg+gGrF Peinf101Ctg12770835g00001.1 15 NTFQPYLHESRHRHALNRARGPGGRF 40 5679*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 0.0013 | 1 | 43 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 18.16 | 1 | 43 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.8E-11 | 16 | 40 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MCVNVLQSSF FLLDNTFQPY LHESRHRHAL NRARGPGGRF LNIKKLRESK SPDLIDDQHV 60 PVSNELQLNT KMLEPDVYQS TPASSGITSC SNGDAIYHQQ SL |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AM489761 | 1e-137 | AM489761.1 Petunia x hybrida partial mRNA for YA6 (nf-YA gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006342951.1 | 1e-37 | PREDICTED: nuclear transcription factor Y subunit A-3-like | ||||
TrEMBL | A5PGU9 | 3e-55 | A5PGU9_PETHY; YA6 (Fragment) | ||||
STRING | PGSC0003DMT400006358 | 5e-37 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13966 | 11 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.3 | 3e-13 | nuclear factor Y, subunit A3 |