PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf03947g00009.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | FAR1 | ||||||||
Protein Properties | Length: 527aa MW: 59379.7 Da PI: 9.0334 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 25.1 | 6e-08 | 87 | 162 | 2 | 78 |
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 fY+++Ak+ GFs++k++ kk+ ++ + i+ r++ C k gk+++ +++ k++ + + C+ +l+ +++ d+ + + Peaxi162Scf03947g00009.1 87 FYQDHAKKHGFSITKRSCKKKsSEYDLIIGRRLSCHKAGKPARYQTS--KKEFEGRWAQFICDPRLRENQWLDDIYSI 162 9************99988776478889**************998877..66666777777777777766666666665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.2E-5 | 87 | 162 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 10.435 | 296 | 334 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0042 | 309 | 336 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MQSFMDVEES SSNSQAGPGN NTSVLSQVLG VHQDDSLFNN RSNSSMAGEN NDPNVATGEG 60 TGINPRAPAG GPTVGMKFPS LEAMVVFYQD HAKKHGFSIT KRSCKKKSSE YDLIIGRRLS 120 CHKAGKPARY QTSKKEFEGR WAQFICDPRL RENQWLDDIY SIRSQWVPVY LTDTFWAGMR 180 STQRSESMHA FFDQFITSRT NLLTFVMQYE VALKTKLDKE LKEEESSKNT RLFSVTGSQW 240 EEQLRAGLTR NIYDMHRKQI QDSIGCNFVG FNVQDEVENF SVSDTGMGLN YAGTEYIMTV 300 VYKRDGQYLD CTCKLFNTRG IICRHMILVV KYHQMPELNE RYIMRRWRGD ISRPHLWAYV 360 PEGYPQMSDE FKRLHGLKGI FYKCAERAIQ SDKLTRTLGL ELVASFGKPN NDDPVPDDIH 420 DVEDHRSDVP ILDPRFLRSK GRPCLIRVRN NWNRRQRTYG TSRRGWGRSR AGDAGAGRGS 480 GGVDARNGNG GVDASRGNAA VDATTACVVN ATGGNSGVDA RRGNCTI |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7498 | 2 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 4e-28 | FAR1-related sequence 6 |