PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf03947g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 527aa    MW: 59379.7 Da    PI: 9.0334
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf03947g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR125.16e-0887162278
                      FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 
                               fY+++Ak+ GFs++k++ kk+ ++ + i+ r++ C k gk+++ +++  k++ +    +  C+ +l+ +++ d+ + +
  Peaxi162Scf03947g00009.1  87 FYQDHAKKHGFSITKRSCKKKsSEYDLIIGRRLSCHKAGKPARYQTS--KKEFEGRWAQFICDPRLRENQWLDDIYSI 162
                               9************99988776478889**************998877..66666777777777777766666666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-587162IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.435296334IPR007527Zinc finger, SWIM-type
SMARTSM005750.0042309336IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MQSFMDVEES SSNSQAGPGN NTSVLSQVLG VHQDDSLFNN RSNSSMAGEN NDPNVATGEG  60
TGINPRAPAG GPTVGMKFPS LEAMVVFYQD HAKKHGFSIT KRSCKKKSSE YDLIIGRRLS  120
CHKAGKPARY QTSKKEFEGR WAQFICDPRL RENQWLDDIY SIRSQWVPVY LTDTFWAGMR  180
STQRSESMHA FFDQFITSRT NLLTFVMQYE VALKTKLDKE LKEEESSKNT RLFSVTGSQW  240
EEQLRAGLTR NIYDMHRKQI QDSIGCNFVG FNVQDEVENF SVSDTGMGLN YAGTEYIMTV  300
VYKRDGQYLD CTCKLFNTRG IICRHMILVV KYHQMPELNE RYIMRRWRGD ISRPHLWAYV  360
PEGYPQMSDE FKRLHGLKGI FYKCAERAIQ SDKLTRTLGL ELVASFGKPN NDDPVPDDIH  420
DVEDHRSDVP ILDPRFLRSK GRPCLIRVRN NWNRRQRTYG TSRRGWGRSR AGDAGAGRGS  480
GGVDARNGNG GVDASRGNAA VDATTACVVN ATGGNSGVDA RRGNCTI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7498216
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.14e-28FAR1-related sequence 6