PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf03254g00012.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family C2H2
Protein Properties Length: 384aa    MW: 43480.3 Da    PI: 4.6218
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf03254g00012.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.7e-05243268123
                               EEET..TTTEEESSHHHHHHHHHH.T CS
                   zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                               y+Cp   C+k + + + L+ H+r+ H
  Peaxi162Scf03254g00012.1 243 YSCPyeGCDKAYIHEYKLNLHLRNmH 268
                               99*********************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525402.28E-396190IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009314.6E-4415190IPR002182NB-ARC
CDDcd000090.0014316180No hitNo description
Gene3DG3DSA:3.40.50.3006.4E-1718181IPR027417P-loop containing nucleoside triphosphate hydrolase
PRINTSPR003647.5E-83449No hitNo description
PRINTSPR003647.5E-8106120No hitNo description
Gene3DG3DSA:3.30.160.601.4E-8238265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.65E-5239273No hitNo description
SMARTSM003550.0015243268IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.344243273IPR007087Zinc finger, C2H2
PROSITE patternPS000280245268IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0043531Molecular FunctionADP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MEVGYITPSI TLEREDEATA LLNQLVGGPK PLDVVTIVGM PGLGKTTFAT KLYSHEAVKE  60
RYDVRSWCCV SQTYDRKSVL MEIMRGLDKE NTTTEESVLA DAIRRFLKGK RYLVVVDDLW  120
STDAWDDLRL IFPDDNNGSR LVLTTRLDEM ASYASTNPHH LRHLTNKESY ELLKKIVFGE  180
ESCPSELEEA LFLFTLNFIV LHFSCIYNNT PEAVKYTPPV EKPMKTPKSS SAAYAPASSD  240
RPYSCPYEGC DKAYIHEYKL NLHLRNMHPG HFPDENTKNA QSTGDNEMDE GSDQDAYAAK  300
RGNGKIQKQS RPKPSLKQPP LKVARKSSSA SPANLSIGKK PWPVKEENYN EEDSEETEEE  360
RDDAGDGWRY GENDEDDEET EEDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6s2p_N7e-381518814191NRC1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0176940.0AB017694.1 Nicotiana tabacum WREBP-2 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA73432332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.28e-36C2H2 family protein