PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf01723g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 225aa MW: 26321.4 Da PI: 10.8347 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.5 | 3.7e-16 | 123 | 211 | 5 | 98 |
-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS B3 5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 ++++++ +++ l++p++fa e +++++ +++++d + rsW+ kl +++r+++++GW++F+ n Lk +D ++F++++ ++ Peaxi162Scf01723g00002.1 123 TIQPSSISRHYLRVPRQFALESCLNNRK-CEIIVRD-ERRSWTCKL--YTSGRRTYIGSGWRKFCIVNCLKKRDRLMFEMVS-NG 202 57889999999*******9998555444.4999999.779******..999999*************************988.66 PP E..EEEEE- CS B3 90 felvvkvfr 98 +++v++++ Peaxi162Scf01723g00002.1 203 EKPVLRLYG 211 667887765 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.35 | 1 | 62 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 3.34E-9 | 1 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.41E-8 | 1 | 52 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 5.9E-8 | 1 | 54 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.94E-19 | 114 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.2E-19 | 116 | 208 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 5.81E-14 | 118 | 210 | No hit | No description |
PROSITE profile | PS50863 | 11.702 | 119 | 213 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.1E-14 | 120 | 213 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.4E-14 | 123 | 210 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence Send to blast |
MILKDEAQRP WSGWIGRVSG RHFGIIRGWS KFRAANGLQV GDAYKFELIK NGKIPEAYFH 60 HLRGSPSLQP EGKKKDFDVK RISNKVLDSQ EKPESNIKKS RKVFPNVEAS KDMHLSHPHF 120 ICTIQPSSIS RHYLRVPRQF ALESCLNNRK CEIIVRDERR SWTCKLYTSG RRTYIGSGWR 180 KFCIVNCLKK RDRLMFEMVS NGEKPVLRLY GKQFGKDDKN HRSNR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016469444.1 | 9e-70 | PREDICTED: B3 domain-containing protein REM10-like isoform X4 | ||||
Refseq | XP_016469446.1 | 9e-70 | PREDICTED: putative B3 domain-containing protein REM15 isoform X6 | ||||
TrEMBL | A0A1S3ZYP1 | 2e-68 | A0A1S3ZYP1_TOBAC; B3 domain-containing protein REM10-like isoform X4 | ||||
TrEMBL | A0A1S3ZYS1 | 2e-68 | A0A1S3ZYS1_TOBAC; putative B3 domain-containing protein REM15 isoform X6 | ||||
STRING | XP_009792889.1 | 1e-68 | (Nicotiana sylvestris) | ||||
STRING | XP_009597618.1 | 4e-67 | (Nicotiana tomentosiformis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G26680.1 | 1e-18 | B3 family protein |