PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01574g00026.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 433aa MW: 47783 Da PI: 6.7985

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01574g00026.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.8	6.1e-06	322	360	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Peaxi162Scf01574g00026.1 322 VRKEKMGDRITALQQLVSPF-----GKTDTASVLSEAIEYIKFL 360 5778999********998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	4.69E-7	303	364	No hit	No description
PROSITE profile	PS50888	12.347	311	360	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-12	321	379	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-9	321	371	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0036	322	366	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MASNFDWPTE IVDIKATSSL HLGTVYPADS QKLHASESSL GGGEGRGVLS TDPNLQMMGL 60 GLPSQGIDWN QPFFRGEKAG SGFRSILQEG LNLDANYQQE GASCQQDQQW TQKNMYHGNS 120 DDSSVNDYKQ QMNRGITLDH QPVFNANMSS NLENASAYGS PSNMLQGLLI SDSHNQESNF 180 TSVRPMYNYP PYNPSNCDVN NPPAADVMPT SSSSSSWSKF PPFLRTSSPP KQQWPLQPPH 240 GQSHFSNSTR AFWNSTSASM DDVRSGFIPS LLPQITNPTI DEKPKHTGEV RDISKIAKKT 300 NVETSNKRPR NEAPSPMPAF KVRKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKFL 360 HEQVNVLSTP YMKSGAAMQH HQSTSDKSNN PEGVKQQDLR SRGLCLVPVS STFPVTHETT 420 VDFWTPSFGG TFR

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MASNFDWPTE IVDIKATSSL HLGTVYPADS QKLHASESSL GGGEGRGVLS TDPNLQMMGL  60
GLPSQGIDWN QPFFRGEKAG SGFRSILQEG LNLDANYQQE GASCQQDQQW TQKNMYHGNS  120
DDSSVNDYKQ QMNRGITLDH QPVFNANMSS NLENASAYGS PSNMLQGLLI SDSHNQESNF  180
TSVRPMYNYP PYNPSNCDVN NPPAADVMPT SSSSSSWSKF PPFLRTSSPP KQQWPLQPPH  240
GQSHFSNSTR AFWNSTSASM DDVRSGFIPS LLPQITNPTI DEKPKHTGEV RDISKIAKKT  300
NVETSNKRPR NEAPSPMPAF KVRKEKMGDR ITALQQLVSP FGKTDTASVL SEAIEYIKFL  360
HEQVNVLSTP YMKSGAAMQH HQSTSDKSNN PEGVKQQDLR SRGLCLVPVS STFPVTHETT  420
VDFWTPSFGG TFR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016453648.1	0.0	PREDICTED: transcription factor bHLH112-like
Swissprot	Q8GXT3	1e-78	BH123_ARATH; Transcription factor bHLH123
TrEMBL	A0A1S3YNG4	0.0	A0A1S3YNG4_TOBAC; transcription factor bHLH112-like
STRING	XP_009617831.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	1e-77	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]