PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01514g00024.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 570aa    MW: 63350.7 Da    PI: 7.4863
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01514g00024.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-165801899
                              --HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                        B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                              +p kf+++++g    s t  l  +s +sW v l   +++++ ++ +GW +Fvk++ L++gD++vF++dg+  f   v++f++
  Peaxi162Scf01514g00024.1  5 IPSKFIKHMEGR--ASGTAFLVGPSENSWPVDL--IQQDDGLFFHNGWDSFVKDHCLESGDSLVFRYDGDLHF--AVQAFDE 80
                              9*****777777..4459***************..99999***************************997666..8888875 PP
2B352.68.1e-17232326198
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                               f kv+++ + + s  l +p +fa+eh   +++++++ l +++g++W+++ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l
  Peaxi162Scf01514g00024.1 232 FTKVMKRFNIGGSYTLNIPYQFATEHL--PKCKVKILLHNLKGKTWTINSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDICIFEL 314
                               778888888888899***********6..34999****************77566666699***********************9 PP

                               -SSSEE..EEEEE- CS
                        B3  85 dgrsefelvvkvfr 98 
                               +++ e  l+v+v+r
  Peaxi162Scf01514g00024.1 315 VRKCE--LRVRVLR 326
                               98544..5888877 PP
3B347.33.7e-154645441497
                               T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                        B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                                 + +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g  + el+v+++
  Peaxi162Scf01514g00024.1 464 YTVKVPYQFSMEHL--PNCRTEIVLRNLNGECWTVNSIPTVKVQTlHTFCGGWSAFVRDNDIQMGDICIFELVG--KYELRVHIC 544
                               557899***99996..45889****************99888888999***********************998..555688887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.283181IPR003340B3 DNA binding domain
SMARTSM010197.6E-9181IPR003340B3 DNA binding domain
SuperFamilySSF1019361.33E-19483IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-19482IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-14580IPR003340B3 DNA binding domain
CDDcd100176.81E-16579No hitNo description
Gene3DG3DSA:2.40.330.105.3E-23224326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-23225326IPR015300DNA-binding pseudobarrel domain
CDDcd100175.34E-20230326No hitNo description
PfamPF023622.9E-14232326IPR003340B3 DNA binding domain
PROSITE profilePS5086313.761232328IPR003340B3 DNA binding domain
SMARTSM010196.7E-15232328IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-22443544IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-24444544IPR015300DNA-binding pseudobarrel domain
CDDcd100176.62E-20449544No hitNo description
SMARTSM010191.2E-10451547IPR003340B3 DNA binding domain
PROSITE profilePS5086312.619451547IPR003340B3 DNA binding domain
PfamPF023629.9E-13456544IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MVQKIPSKFI KHMEGRASGT AFLVGPSENS WPVDLIQQDD GLFFHNGWDS FVKDHCLESG  60
DSLVFRYDGD LHFAVQAFDE SSCEKEAAFN ADCSQGATNL YNLALRKRDR GNSALLECII  120
EGVPKKMRST QIPSDCMSNQ DTHGIASGKD GCMPEEVVSS NRRSYDASFP NEMENAGNAS  180
INSVTIAVPS TDIVCYNPEL KAGIGTSEED TWLSAQEAEK VARSFTSSFP SFTKVMKRFN  240
IGGSYTLNIP YQFATEHLPK CKVKILLHNL KGKTWTINSI PTTRVQTSHT FCGGWLSFVR  300
DNNIDLGDIC IFELVRKCEL RVRVLRVEKE ENDCSKVVHE GLATDYAATP AKISGWESHK  360
VGANSIHCLQ QVAKATYDKK GSGHDKEKHG TMMRSHQLHS QSKITSGDSV VRKPTSSQDK  420
QGSFTKSCMS MKSVPEEKLA AESFNSNFPH FVRIMKKFNI SGSYTVKVPY QFSMEHLPNC  480
RTEIVLRNLN GECWTVNSIP TVKVQTLHTF CGGWSAFVRD NDIQMGDICI FELVGKYELR  540
VHICAIGKKG LDYRNGITSN ESAILASLTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU9145241e-142CU914524.3 S.lycopersicum DNA sequence from clone LE_HBa-107D6 on chromosome 4, complete sequence.
GenBankHG9755161e-142HG975516.1 Solanum lycopersicum chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009781392.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009781393.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009781394.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_009781395.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X1
RefseqXP_016440818.10.0PREDICTED: B3 domain-containing protein Os01g0723500-like isoform X4
TrEMBLA0A1S3XLM20.0A0A1S3XLM2_TOBAC; B3 domain-containing protein Os01g0723500-like isoform X4
TrEMBLA0A1U7X3F00.0A0A1U7X3F0_NICSY; B3 domain-containing protein Os01g0723500-like isoform X1
STRINGXP_009781392.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-18B3 family protein