PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01514g00020.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family FAR1
Protein Properties Length: 278aa    MW: 32200.2 Da    PI: 6.4286
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01514g00020.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR193.82.1e-2943132191
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 
                               +fYn+YA++vGFs+rk++ +++k+ g +t+r+ +C keg+r ++++k  +++++r+etrtgC+a+++++++++gk+++tk+eleH
  Peaxi162Scf01514g00020.1  43 NFYNAYARRVGFSIRKEYVNTNKKLGYVTSRKITCFKEGFRGDDNRK-YQAKNPRKETRTGCQAHIVITRQSSGKYHITKVELEH 126
                               6******************************************9999.9************************************ PP

                      FAR1  86 nHelap 91 
                               nH+l+p
  Peaxi162Scf01514g00020.1 127 NHPLVP 132
                               ***986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.8E-2643132IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDNSGESMCE ITPEEILQSS FQEPIDFEPK LGHEFDSDES AVNFYNAYAR RVGFSIRKEY  60
VNTNKKLGYV TSRKITCFKE GFRGDDNRKY QAKNPRKETR TGCQAHIVIT RQSSGKYHIT  120
KVELEHNHPL VPPTMVHMLP SHRRINVAQS HEIDLAEDAG LFAKATFDFM SLQAGGRENL  180
GYTKLDHKNY LRTKRQKAMK QGEAGLLLEY FEKKRTEDPS FFFAVQLDID DMIINIFWAD  240
SKMILDYEIF GDVLSFDTTY QTNXKKIVTE ISYLELEI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009799718.11e-138PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A314KN161e-149A0A314KN16_NICAT; Protein far1-related sequence 5
STRINGXP_009799718.11e-137(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-58FAR1-related sequence 5