PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01447g00005.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 364aa    MW: 40665.2 Da    PI: 4.7111
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01447g00005.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.82.1e-53101381128
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyW 83 
                               lp+G+rF+Ptdeelv++yL+ k++g ++e+ +vi+evdi+k+ePwdLp  + v+++++ew+fF+++d+ky++g+r nrat++gyW
  Peaxi162Scf01447g00005.1  10 LPVGYRFRPTDEELVNHYLRLKINGADNEV-SVIREVDICKLEPWDLPdlSVVESNDNEWFFFCPKDRKYQNGQRLNRATERGYW 93 
                               799************************999.99**************96448888999*************************** PP

                       NAM  84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                               katgkd+++++kkg+++g+kktLv+y grap+g++t+Wv+heyr+
  Peaxi162Scf01447g00005.1  94 KATGKDRNIVTKKGAKIGMKKTLVYYIGRAPEGKRTHWVIHEYRA 138
                               *******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.29E-606161IPR003441NAC domain
PROSITE profilePS5100555.76810161IPR003441NAC domain
PfamPF023654.7E-2711137IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGKIPPLNSL PVGYRFRPTD EELVNHYLRL KINGADNEVS VIREVDICKL EPWDLPDLSV  60
VESNDNEWFF FCPKDRKYQN GQRLNRATER GYWKATGKDR NIVTKKGAKI GMKKTLVYYI  120
GRAPEGKRTH WVIHEYRATD KSLDGTHPGQ GAFVLCRLFR KNDLKQDEHV ESSNLDDAEQ  180
NATAAKSPTD DELSEAATPL VAGQPLGDSD KSYAAKFPKG EPYGKQLPLE SHSNSCIADD  240
TEDQMVDITS IPPDLELEKA LGNFCDQSSQ PLDWKIFSPL HAQMQVEFGS SYLQAPMNND  300
MSAFQKDVQF QYGTNALDIN DFLDSVIVSS DEFSCGDSGQ EVGLHNFDTT IHSFTGAPVK  360
DSGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A8e-46916616170NO APICAL MERISTEM PROTEIN
1ut4_B8e-46916616170NO APICAL MERISTEM PROTEIN
1ut7_A8e-46916616170NO APICAL MERISTEM PROTEIN
1ut7_B8e-46916616170NO APICAL MERISTEM PROTEIN
3swm_A7e-46916619173NAC domain-containing protein 19
3swm_B7e-46916619173NAC domain-containing protein 19
3swm_C7e-46916619173NAC domain-containing protein 19
3swm_D7e-46916619173NAC domain-containing protein 19
3swp_A7e-46916619173NAC domain-containing protein 19
3swp_B7e-46916619173NAC domain-containing protein 19
3swp_C7e-46916619173NAC domain-containing protein 19
3swp_D7e-46916619173NAC domain-containing protein 19
4dul_A8e-46916616170NAC domain-containing protein 19
4dul_B8e-46916616170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1016030.0AY101603.1 Petunia x hybrida nam-like protein 1 (Nh1) mRNA, Nh1-R27 allele, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019226326.10.0PREDICTED: NAC domain-containing protein 62-like
TrEMBLQ8L8G00.0Q8L8G0_PETHY; Nam-like protein 1
STRINGXP_009608176.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.14e-92NAC domain containing protein 62