PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01416g00015.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 305aa    MW: 33057.2 Da    PI: 5.8159
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01416g00015.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.6e-10154198554
                               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                               h+++Er RR+ri +++  L+el+P++      K + a++L +  +Y+k L
  Peaxi162Scf01416g00015.1 154 HSIAERLRRERISERIKALQELVPSC-----NKTDRAAMLDEILDYVKFL 198
                               99***********************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.48E-11147203No hitNo description
SuperFamilySSF474598.9E-16147209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.323149198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.4E-16151209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.8E-7154198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-11155204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MASNQPEGYG ADDFLEQILA IPSYASLPVN DVSNSSETSS FTPPSQLSSA AAGGGAQVQH  60
PLFPLGLSLD NGRDDVNDAG GYTVKHEREG INIGNLYGGL GQMQSHAIRH AVPLVHHVQP  120
FQGQPTASTT VTVPHPPAIR PRVRARRGQA TDPHSIAERL RRERISERIK ALQELVPSCN  180
KTDRAAMLDE ILDYVKFLRL QVKVLSMSRL GGASAVAQLV ADIPLQSVEG DSAESRSNQH  240
IWEKWSNVDT EREVAKLMEE DVGSAMQYLQ SKSLCIMPIS LAALIYPTQQ PDDPSMVKPE  300
PAAPS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158163RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015087272.10.0transcription factor UNE12-like
SwissprotO227682e-81UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A3Q7I8260.0A0A3Q7I826_SOLLC; Uncharacterized protein
STRINGSolyc09g083220.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64211932
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.22e-66bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]