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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01413g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | G2-like | ||||||||
Protein Properties | Length: 190aa MW: 20427.1 Da PI: 7.9331 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 95.3 | 4.6e-30 | 67 | 120 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av+++ G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Peaxi162Scf01413g00006.1 67 RPRLVWTPQLHKRFVDAVAHI-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 120 59*******************.********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.24E-20 | 64 | 124 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.104 | 64 | 123 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 66 | 125 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.0E-24 | 68 | 120 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 2.7E-7 | 70 | 119 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MPLSQTLITP DLAIAFDIQN PNSPIPKTHQ TVVNSSAEFE YSADLNGGTA GSGGGGGVDE 60 PARTLKRPRL VWTPQLHKRF VDAVAHIGIK NAVPKTIMQL MSVDGLTREN VASHLQKYRL 120 YLKRMQQGGH SSNGNSMPDS ATDNLFASSP RMGMSVHSTS PVLPSYVEDL ESATAANGRK 180 VLTLFPTVDD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5lxu_A | 6e-34 | 67 | 123 | 1 | 57 | Transcription factor LUX |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269|PubMed:20331973}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269|PubMed:20331973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975449 | 1e-59 | HG975449.1 Solanum pennellii chromosome ch10, complete genome. | |||
GenBank | HG975522 | 1e-59 | HG975522.1 Solanum lycopersicum chromosome ch10, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009790047.1 | 3e-69 | PREDICTED: transcription factor PCL1-like | ||||
Refseq | XP_016480389.1 | 3e-69 | PREDICTED: transcription factor PCL1-like | ||||
Swissprot | O22210 | 1e-53 | MYBC1_ARATH; Transcription factor MYBC1 | ||||
TrEMBL | A0A1S4AUN4 | 6e-68 | A0A1S4AUN4_TOBAC; transcription factor PCL1-like | ||||
TrEMBL | A0A1U7XDB2 | 6e-68 | A0A1U7XDB2_NICSY; transcription factor PCL1-like | ||||
STRING | XP_009790047.1 | 1e-68 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2432 | 23 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10760.1 | 4e-57 | G2-like family protein |
Publications ? help Back to Top | |||
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