PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf01306g00019.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 455aa MW: 50589.8 Da PI: 6.0486

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf01306g00019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.8	1.3e-05	348	385	12	54
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 R +++ +++ L++l+ + +K + a++L +A+eYIk L Peaxi162Scf01306g00019.1 348 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 385 677888999*****998.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	12.17	336	385	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-5	346	389	No hit	No description
SuperFamily	SSF47459	8.77E-12	346	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	9.2E-9	350	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 455 aa Download sequence Send to blast
MADEYQAGVC GGNWWNSNRS IFGSSILCAP SVHHDPIGSN FAWQNHDLLM DMKSSRSNDE 60 SGNSDESVVL QELPKHHQSH ESNTLQMLGI GLSSSSTSSA TPDWNHTLIN GNERADSSYP 120 SILQEDLNSS LNYRQETGVD CSDLGNNFST RTEDSSSNSF EQVNQDFTLG MKIPITSSST 180 QESTHVMNSS FSNYPSLLQT LFDNDPPTPQ QPPQQQQSLF TNNQPMNFPL SLNYKPNLND 240 QFSPSLPKFP SLLRPSLPKQ TPSNHFRFSN STSLYNTSAN LLPSMHSQLL QPTYNEKSSV 300 TNVTAKPNVE EFKESRSSSL AKKTGNNEPA FKRPRMETPS PLPTFKVRKE KLGDRITALQ 360 QLVSPFGKTD TASVLHEAIE YIKFLHDQVN VLSTPYMKNG STPQHQQTAD KVKDQEGSKQ 420 ELRSRGLCLV PMSSTFPVAT ETTTDFWTPT FGGTF

Sequence ? help Back to Top

Protein Sequence Length: 455 aa Download sequence Send to blast

MADEYQAGVC GGNWWNSNRS IFGSSILCAP SVHHDPIGSN FAWQNHDLLM DMKSSRSNDE  60
SGNSDESVVL QELPKHHQSH ESNTLQMLGI GLSSSSTSSA TPDWNHTLIN GNERADSSYP  120
SILQEDLNSS LNYRQETGVD CSDLGNNFST RTEDSSSNSF EQVNQDFTLG MKIPITSSST  180
QESTHVMNSS FSNYPSLLQT LFDNDPPTPQ QPPQQQQSLF TNNQPMNFPL SLNYKPNLND  240
QFSPSLPKFP SLLRPSLPKQ TPSNHFRFSN STSLYNTSAN LLPSMHSQLL QPTYNEKSSV  300
TNVTAKPNVE EFKESRSSSL AKKTGNNEPA FKRPRMETPS PLPTFKVRKE KLGDRITALQ  360
QLVSPFGKTD TASVLHEAIE YIKFLHDQVN VLSTPYMKNG STPQHQQTAD KVKDQEGSKQ  420
ELRSRGLCLV PMSSTFPVAT ETTTDFWTPT FGGTF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009629262.1	0.0	PREDICTED: transcription factor bHLH112-like
TrEMBL	A0A1J6KRN6	0.0	A0A1J6KRN6_NICAT; Transcription factor bhlh112
STRING	XP_009629262.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA860	24	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20640.1	3e-46	bHLH family protein