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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01251g00013.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 228aa MW: 26033.5 Da PI: 4.5229 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.9 | 3.2e-15 | 14 | 69 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46 rg+W++ Ed++l++++ ++G + tW+ Ia++++ gRt++++k+ w++ Peaxi162Scf01251g00013.1 14 RGPWSKKEDDILINYIDKHGHPnwrqlpklaafTWSVIAAKLP-GRTDNEIKNIWHT 69 89*****************************************.*********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-21 | 5 | 80 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 16.826 | 9 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.16E-13 | 9 | 79 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-9 | 13 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.9E-12 | 14 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.03E-8 | 16 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence Send to blast |
MGRTPCCEKL GLNRGPWSKK EDDILINYID KHGHPNWRQL PKLAAFTWSV IAAKLPGRTD 60 NEIKNIWHTR LKKKMNQSQI QEKTPDIREQ PSETSKSEDS TNIQENTEIS SPKPNSNNQH 120 EPSSSLRSSS SITSSSEGSC SNTTTTSSHI DESRDQMNLE NLLEVDDNFW SEVLWATPAD 180 DSKDNNLDFS LSSVEKNYEL DSSLNDNWLW DDLFSRANEF LLEFPELV |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009770485.1 | 1e-84 | PREDICTED: myb-related protein Myb4-like | ||||
TrEMBL | A0A1U7W8B2 | 3e-83 | A0A1U7W8B2_NICSY; myb-related protein Myb4-like | ||||
STRING | XP_009770485.1 | 5e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA17103 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06180.1 | 1e-34 | myb domain protein 13 |