PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01184g00004.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 425aa    MW: 49175.8 Da    PI: 6.2989
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01184g00004.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix76.83.4e-24103199186
                  trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tse 74 
                               +Wt+q+v++Li+a+++++e+  ++            kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e
  Peaxi162Scf01184g00004.1 103 KWTDQMVRLLITAVSYIGEETAAADyggrrkcsnlHKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCE 187
                               7**************999999987556666778889*********************************************6699 PP

                  trihelix  75 ssstcpyfdqle 86 
                               ++++ +++d l+
  Peaxi162Scf01184g00004.1 188 VVENPALLDVLD 199
                               999999988876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-22101225No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MESNLWSGNM MPGNNSSYGG FDLRANHQDY QSHSTKQGSI IDPSINNANF PLTIGSMQDN  60
VCLGKGDHRG KSASDEDEPS FTEDGHNELN RGKKGATAWQ RVKWTDQMVR LLITAVSYIG  120
EETAAADYGG RRKCSNLHKK GKWKSVSKVM AERGHFVSPQ QCEDKFNDLN KRYKRLNEIL  180
GRGTSCEVVE NPALLDVLDH VTEKGKEEVR KILSSKHLHY EEMCSYHNGN RLHLPPDPEL  240
QRSLRLALRS RDEHDDNDVR KHLQDDNDED DHEADLEDRD EYEENLSLPR EHRLHGMPGG  300
FSKRIKQCQG HEIVNSLTTL DCNRAYSSQP QNANTDANQM FPEGKKADIL QKQWMDHRSL  360
QLEEQKLHIQ AQMLELEKER FDWQRFSRKK DIELEVLRLE NERMKLENER LALELKQKEM  420
LAYNV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009590352.10.0PREDICTED: uncharacterized protein LOC104087550 isoform X1
TrEMBLA0A1S3ZB380.0A0A1S3ZB38_TOBAC; uncharacterized protein LOC107784772 isoform X1
STRINGXP_009590352.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA76001830
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-133sequence-specific DNA binding transcription factors