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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01178g00119.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 28661 Da PI: 9.0018 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 40.1 | 6.4e-13 | 79 | 129 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++++h +Er+RR+++ + ++ Lr+llP + +K s ++ +Av+YIk+Lq Peaxi162Scf01178g00119.1 79 KKVMHRDIERQRRREMATLYSSLRSLLPLQ----YGKRSVSDHMHEAVNYIKQLQ 129 6899*************************7....5999****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 3.22E-8 | 76 | 132 | No hit | No description |
SuperFamily | SSF47459 | 7.33E-13 | 77 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.738 | 78 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 4.1E-10 | 79 | 129 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.9E-10 | 80 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 0.0047 | 84 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MFPLQQSDEL LFQILSNDPC QQGKITQDLI VDYASLETSH SLNIKSTSRK RKLPRKVLGK 60 NLEKNEEITA SAATTPELKK VMHRDIERQR RREMATLYSS LRSLLPLQYG KRSVSDHMHE 120 AVNYIKQLQA NINDLERKRD KLKMLIPSSI SPRGSVENGS SDISSVSTDH CVIVSPCHGG 180 VEILITSNYR GKNLPLSRVL QELLKEGLDV VSCVSAQVNQ KLLHRIQSEA CDMKCINLHA 240 LQGKVMDVIN NDLY |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009587651.1 | 1e-115 | PREDICTED: transcription factor bHLH36-like | ||||
TrEMBL | A0A1S4AYZ3 | 1e-112 | A0A1S4AYZ3_TOBAC; transcription factor bHLH118-like | ||||
STRING | XP_009587651.1 | 1e-114 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA598 | 24 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51790.1 | 2e-39 | bHLH family protein |