 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Peaxi162Scf01084g00119.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 231aa MW: 27038.8 Da PI: 9.8019 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Peaxi162Scf01084g00119.1 | genome | SGN | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 93.2 | 1.3e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvt+skRrng++KKA+EL vLCda+v++i++sstgkl+e++s
Peaxi162Scf01084g00119.1 9 KRIENQTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMISSTGKLHEFIS 59
79***********************************************86 PP
|
| 2 | K-box | 96 | 5.9e-32 | 71 | 169 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85
yqk+ g++l+++++e++q++l+kLk+ ++nL++e+R+++Ge+L++L++++L++L +++++slk iR++K++++ +qie+ +kk +
Peaxi162Scf01084g00119.1 71 YQKTVGVDLWNSHYEKMQEQLRKLKEVNRNLRKEIRQRMGESLNDLNYEQLEELMENVDNSLKLIRERKYKVIGNQIETFKKKVR 155
899999******************************************************************************* PP
K-box 86 elqeenkaLrkkle 99
+++e++++L +++
Peaxi162Scf01084g00119.1 156 NVEEIHRNLLLEFD 169
********987765 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 4.1E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.071 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.52E-38 | 2 | 80 | No hit | No description |
| PRINTS | PR00404 | 3.8E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 4.58E-36 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.6E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.8E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.8E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.2E-19 | 82 | 167 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 15.973 | 84 | 174 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010093 | Biological Process | specification of floral organ identity |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 231 aa
Download sequence Send
to blast |
MARGKIQIKR IENQTNRQVT YSKRRNGLFK KANELTVLCD AKVSIIMISS TGKLHEFISP 60
SITTKQLFDL YQKTVGVDLW NSHYEKMQEQ LRKLKEVNRN LRKEIRQRMG ESLNDLNYEQ 120
LEELMENVDN SLKLIRERKY KVIGNQIETF KKKVRNVEEI HRNLLLEFDA RQEDPYGLVE 180
QEGDYNSVLG FPNGGHRILA LRLQPNHHQP NHHHHLHSGG GSDITTFALL E
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor involved in the genetic control of flower development. Necessary for the normal development of petals. Absence of the PMADS1 protein causes transformation of petals into sepals. |
