PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01064g00013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family bHLH
Protein Properties Length: 271aa    MW: 30469.4 Da    PI: 9.3959
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01064g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.2e-09131178455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Peaxi162Scf01064g00013.1 131 SHSLAERVRRERISERMKVLQTLVPGC----DKVTGKALMLDEIINYVQSLQ 178
                               8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.7E-17125195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.59E-10125182No hitNo description
Gene3DG3DSA:4.10.280.107.0E-17127195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.688127177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.9E-7131178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10133183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MSGLLEEPNN TSTSTTVPNC INSKSYQPES FILEMDSSSV IDKREGVAQV NSMDRKRKSS  60
EGSSNSMSSS QSKNVREGDH GKMQKKRNGH VITKDSKEKK AKKDEKKLAN DQEAPTGYIH  120
VRARRGQATD SHSLAERVRR ERISERMKVL QTLVPGCDKV TGKALMLDEI INYVQSLQNQ  180
VEFLSMKLAS LNPMYYDFGM ELDALMVRPD QSLSGLEAPV ANPNSSYPLL DSSASFMFQQ  240
FHFSNPISQD KYIVFRLMNS SYGVYLTKDK T
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHE6539241e-106HE653924.1 Nicotiana tabacum mRNA for bHLH trascription factor (upp-L gene), cultivar Samsun nn.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015164223.11e-105PREDICTED: transcription factor bHLH137, partial
SwissprotQ93W887e-53BH137_ARATH; Transcription factor bHLH137
TrEMBLM1CKP31e-103M1CKP3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000695681e-104(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41162345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.29e-53bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]