PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf01052g10014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C2H2 | ||||||||
Protein Properties | Length: 474aa MW: 53146.8 Da PI: 6.4166 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.8 | 0.00018 | 87 | 104 | 2 | 19 |
EETTTTEEESSHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrH 19 +C++Cgk Fs++ ++ H Peaxi162Scf01052g10014.1 87 VCENCGKEFSSWKSFLEH 104 6**************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 6.1 | 17 | 39 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 0.0049 | 17 | 39 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.6 | 17 | 39 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.85E-5 | 17 | 39 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 19 | 39 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.85E-5 | 81 | 105 | No hit | No description |
SMART | SM00355 | 180 | 86 | 106 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.55E-6 | 232 | 255 | No hit | No description |
PROSITE profile | PS50157 | 10.076 | 233 | 260 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.13 | 233 | 255 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.4E-9 | 233 | 257 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 235 | 255 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.55E-6 | 295 | 322 | No hit | No description |
SMART | SM00355 | 0.52 | 300 | 322 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.328 | 300 | 322 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 6.2E-13 | 300 | 323 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 302 | 322 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence Send to blast |
MDCIDQEQQQ QQPVFKHYCR VCKKGFVCGR ALGGHMRAHG IGDEVVTMDD DDQASDWEDK 60 FGGSVKEGNK RMYQLRTNPN RQKSNRVCEN CGKEFSSWKS FLEHGKCSSE DAEESLVSSP 120 GSEGEDYIYD GRKEKGYGWS KRKRSLRTKV GGLSTSTYQS SEEEDLLLAK CLIDLANARV 180 DTSLVEPEES CASASREEER AARNSMAYGF TPLVSTRVPF DNKAKGASSK GLFECKACKK 240 VFNSHQALGG HRASHKKVKG CYAAKQDQLD DILIDDQDVN ITHDQEFLQS SKSMRKSKIH 300 ECSICHRVFS TGQALGGHKR CHWITSNSPD SSKFHFNGHV EQINLRSNMH KSDALDLNNL 360 PTHEDMSRIR RDPFNPLSFE VSTDIHLQYP WSCAPKNDDN DNYYLEEIKI DSNANNGKYN 420 INNGATQNVE DDEADSKLKL AKLSDLKDMN TNSDNPAHWL QVGIGSTTEV GADS |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB000455 | 0.0 | AB000455.1 Petunia x hybrida mRNA for PEThy;ZPT4-1, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009785654.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
Refseq | XP_016484023.1 | 0.0 | PREDICTED: zinc finger protein ZAT4-like | ||||
TrEMBL | P93717 | 0.0 | P93717_PETHY; PEThy;ZPT4-1 | ||||
STRING | XP_009785654.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1910 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35280.1 | 7e-30 | C2H2-like zinc finger protein |