PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf01038g00149.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HB-PHD
Protein Properties Length: 725aa    MW: 81959.9 Da    PI: 9.2427
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf01038g00149.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox322.1e-105085481353
                               HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                  Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                               + L  +F++n  ps++ re+L+++lgL+ ++V  WF+N R+
  Peaxi162Scf01038g00149.1 508 QKLRCVFAENELPSRSVREDLSNQLGLEFEKVNKWFKNARY 548
                               679999**********************************8 PP
2PHD33.41e-11228283151
                               SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                       PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                               +C+ C+   +  +++++lCd +C+ +fH+kCl+++l +e++p g   w+C+ Ck+k
  Peaxi162Scf01038g00149.1 228 ICAKCKLheAFPDDDIILCDgTCNCAFHQKCLDPPLLTENIPPGdeGWFCKFCKCK 283
                               588888844445********56********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579031.37E-13220286IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.107.9E-11224284IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.042226283IPR019787Zinc finger, PHD-finger
SMARTSM002495.4E-9228281IPR001965Zinc finger, PHD-type
PfamPF006289.2E-9228283IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590229280IPR019786Zinc finger, PHD-type, conserved site
CDDcd155041.86E-29229280No hitNo description
SMARTSM003892.6E-4491557IPR001356Homeobox domain
SuperFamilySSF466891.58E-8506557IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.3E-9508547IPR009057Homeodomain-like
CDDcd000868.07E-7508548No hitNo description
PfamPF000465.9E-8508548IPR001356Homeobox domain
PROSITE profilePS5007110.965510553IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 725 aa     Download sequence    Send to blast
MSHSKLLTTM PGKVKKDKHK AVASSSQIKD ELRRLDKKRS KLKSKSHRMA THSSSSKKTV  60
TGEGKAKGSS GKNILKEEIQ QKAKSSKKRS PLSFQGEKHQ ACNSKDNLKH ENLDTGSEKL  120
KRRRKKKMRK RNADPDDVSR LQRRTRYLLI KMKLEQNLID AYSAEGWKGQ SREKIRPERE  180
LQRAKKQILT CKLGIREIVH RLHLLSSAGQ IDDSVIAPDG SVHHQHIICA KCKLHEAFPD  240
DDIILCDGTC NCAFHQKCLD PPLLTENIPP GDEGWFCKFC KCKMEIIEAT NAHIGTHFAM  300
DSNWEDIFKE EALLPEGGES LLCPEQDWPS DDSEDDDYDP EKIANSATDS FESGSSSEAS  360
SASMLGSLED ELLALTGKLE NGRCGKDYLS ERDAGSDYEE TTDFEVLSGP RQRKTVDYIK  420
LNDEMFGKHA PAIEQNSEDE DWDPTKRKRK RKESESDAAS TLITLCGSER SCPEKGTTEV  480
EKESSCKPAK REIFRLPPNA VESSVLYQKL RCVFAENELP SRSVREDLSN QLGLEFEKVN  540
KWFKNARYTA LKARKVENTK PCQVTSPTAS EGCVSETVKG KLTEKISSRD AEENAAQAAK  600
DLKRSPNEET ARLVIRPCKK KHDKKAKKLS VGKAETNVDF GDDVSLKLLR ERAKKERRKL  660
NSKGRERIQK AEAEMQKLCK IKDKIERLQN VLSRLPNRRF RRGDASSSDE SSVIFVPVAE  720
LQEKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1119126LKRRRKKK
2121129RRRKKKMRK
3122128RRKKKMR
4445451KRKRKRK
5446451RKRKRK
6446452RKRKRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754461e-119HG975446.1 Solanum pennellii chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015080840.10.0pathogenesis-related homeodomain protein isoform X2
SwissprotP487851e-145PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A3Q7H4G00.0A0A3Q7H4G0_SOLLC; Uncharacterized protein
STRINGSolyc07g008730.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106842123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.11e-139pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]