PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00979g00024.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 253aa MW: 27889.8 Da PI: 10.084 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31.2 | 3.8e-10 | 68 | 113 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +h ++Er+RR+riN +++L++l P + +K +K+ +L++Av +k+L Peaxi162Scf00979g00024.1 68 THAMAERKRRERINAHLHTLKKLFPYL-----PKKDKSRVLTEAVTQLKEL 113 79************************8.....699**********999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 1.02E-12 | 56 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 13.389 | 64 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.56E-8 | 67 | 118 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.0E-11 | 68 | 123 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.2E-7 | 68 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.0E-8 | 70 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 6.7E-5 | 169 | 234 | No hit | No description |
CDD | cd04873 | 0.00325 | 169 | 233 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MISSLQGCDG FLQRTNSLQL LQKKNGSGNG HKYYSSSHTM ANNSTSTSAD ENAKSTRKSN 60 KSKDAAWTHA MAERKRRERI NAHLHTLKKL FPYLPKKDKS RVLTEAVTQL KELRKKVAQQ 120 LETKKDDKGG CCSNNEFSSL FLPSETDEVA VSYYEGSSVN EGQLMVKATV CCEDRPALNR 180 DLSMAVSSVQ GRVIKAEMAT VGCRTKAELV VVLCKENGGE RDIAQLRRAL RAVVENRALG 240 LGSSVVLGRR FGC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 72 | 77 | ERKRRE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019265405.1 | 1e-111 | PREDICTED: putative transcription factor bHLH107 | ||||
TrEMBL | A0A314L264 | 1e-110 | A0A314L264_NICAT; Transcription factor bhlh30 | ||||
STRING | XP_009779545.1 | 1e-110 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13713 | 13 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56770.1 | 5e-27 | bHLH family protein |