PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00953g00217.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NF-YA
Protein Properties Length: 286aa    MW: 31690.1 Da    PI: 9.3307
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00953g00217.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA101.58.3e-32145201158
                 CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                               +ep+YVNaKQy++Il+RRq Rak+e ekk  +k+rkpylheSRh+hA+rR+Rg+gGrF
  Peaxi162Scf00953g00217.1 145 EEPVYVNAKQYHGILRRRQIRAKAELEKKA-IKARKPYLHESRHQHAMRRARGTGGRF 201
                               69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-36143204IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.039144204IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-27146201IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-24147169IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860149169IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-24178201IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPTIAKHDGR QLETGLRITS QSTTQMQPWW QGYGENTMPL ASENTIAQGN ADGGNQEKET  60
KALAIESGSN GNNVPYQQNL KHIASTAATV MGEQQKEHAG HSTMLASYPY PDLQYGAMMT  120
YAAPVHPHLF EIHHGRMPLP LDMEEEPVYV NAKQYHGILR RRQIRAKAEL EKKAIKARKP  180
YLHESRHQHA MRRARGTGGR FLNTKKLNDM DCTSEDPKKS GATIPTHSGN SSGSGSYDQQ  240
EKDMHKGHSH SFLTGNNHGS SVYLSQNTGN EQGNGHYGRN LNTFSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-20145225277NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4897630.0AM489763.1 Petunia x hybrida partial mRNA for YA3 (nf-YA gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006345444.11e-168PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLM1A9B51e-166M1A9B5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000176981e-167(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.12e-29nuclear factor Y, subunit A7