PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00953g00002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | C3H | ||||||||
Protein Properties | Length: 737aa MW: 79635.8 Da PI: 6.7332 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.5 | 4.1e-07 | 309 | 329 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C++Gd C +aHg Peaxi162Scf00953g00002.1 309 PCPEFRK-GACRRGDMCEYAHG 329 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 3.11E-17 | 35 | 163 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 1.1E-17 | 36 | 164 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.68E-15 | 36 | 162 | No hit | No description |
Pfam | PF12796 | 5.4E-10 | 71 | 153 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.3 | 84 | 159 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0047 | 84 | 114 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 2.6E-5 | 85 | 100 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 11.514 | 119 | 154 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 7.6E-4 | 119 | 151 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 2.6E-5 | 138 | 152 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 9.5E-6 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.981 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.2E-4 | 309 | 329 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.643 | 339 | 363 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 737 aa Download sequence Send to blast |
MCTGPERSNS CSSTNQSITD SKSSMKGITK LTVETEDSFS SLLELASNND LEGFKRSIER 60 DATAIDEVGL WLVRKKGSKQ IVNEERTPLM VAASYGSLDV LKLIISNPEV DVNRACGPNK 120 CTALHCATSG GSVNVVDAVK LLLSAGADPN VEDANGQRPA DVIVIPPRLP GARASLEEML 180 LNNSSDGSVG ECKLRVSVTT SNASSPVLSS SPENGSPYSP SDSLSSPMAS KFSDIPANSA 240 PEKKEYPIDP SLPDIKNSIY STDEFRMFSF KVRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PEFRKGACRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTG CARRVCFFAH 360 TTEELRPLYV STGSAVPSPR SAASAASVMD MAAALNLFPG SPSAHSMMSP SAFNQPMSPT 420 ANGMSHSSAP WPQPNVPTLH LPGSNLQSSR LRSSLSARDI PPEDFNMLQD FDAQQLLLND 480 MACYSQARPN SASLNRSGRS KTLTPSNLEE LFSAEITSSP RYSDQAAASG VFSPSHKSAF 540 FNQFQQQQSM LSPINTNVFS PKNMEHPLLQ ASFGVSSSGR MSPRSMEPIS PMSARSLSAF 600 AQREKQQQQL RSLSSRDLGS NNASSIVGSP VGGNSWSNWG SPNGKVDWSV NGSGLGHNMR 660 RSSSFEQLNN GEEPDLSWVQ SLVKESPSEM KEKQQAAPNS GAAPSGEGSK NSSQIDSVDH 720 SVLGAWLEQM QLDQLVA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975440 | 0.0 | HG975440.1 Solanum pennellii chromosome ch01, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016434806.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 30-like | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A1S3X4Q4 | 0.0 | A0A1S3X4Q4_TOBAC; zinc finger CCCH domain-containing protein 30-like | ||||
STRING | XP_009799603.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA883 | 24 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain |
Publications ? help Back to Top | |||
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