![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00939g00210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 445aa MW: 49406.1 Da PI: 4.9433 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 249.7 | 1.2e-76 | 151 | 437 | 1 | 299 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 lv++L++cAeav++++l+la+ l+ ++ la ++ d+ +++a yf++AL +r+++ t++++ +e ++ f+ Peaxi162Scf00939g00210.1 151 LVKTLMACAEAVQQKNLNLADGLVRDIRILAVQQSDAKKKVANYFAQALDRRIHE-------------TNPHDIVEFSYYTDQFY 222 6899**************************************************9.............444568888888899** PP GRAS 86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAe 170 e+s +lk++h+t+NqaI++a+++ +rvH+iDf++++GlQW aLl+ La R++gpp +R+T +g+ +++++ +l+e++++L+++A+ Peaxi162Scf00939g00210.1 223 ETSRYLKVGHFTTNQAIVKAFANYNRVHVIDFSLNKGLQWRALLHDLALRSGGPPAFRLTKIGPVQPDNSAALQEVEWKLSELAD 307 ************************************************************************************* PP GRAS 171 elgvpfefnvlvakrledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv.eqeadhnses 252 ++gv+fe++ + +++l++++ L+++p Ea+aVn+vl+l++l +s++ +++++L+ + +++Pk+v+ eq +hn++ Peaxi162Scf00939g00210.1 308 SIGVEFEYREIKVSSLAEVDATILDIRPsnLEAVAVNFVLELYHLT---LSSPGAIEKLLHSIEEMQPKIVTSFrEQAENHNGSV 389 ***************************9989************997...666666668**************762666778**** PP GRAS 253 Flerflealeyysalfdsl..eaklpreseerikvErellgreivnvva 299 F++rf ea + ys++fd l ++++ ++s + + vE+ lgr+i n+v Peaxi162Scf00939g00210.1 390 FVDRFNEAWHNYSTMFDFLekKETAQPNSPNSNLVEEY-LGRQIYNIVV 437 *******************5333455666777888877.********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 40.955 | 125 | 445 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-74 | 151 | 437 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 445 aa Download sequence Send to blast |
MDTSMEEGDS FLSNTDAIIY GTSDHSGWGG DSMISDPNIV LSSTSTDDHY QQQITTAAGC 60 GGDDSMIISS SGASSSCFMN NNKQSGYKQE VRIFNVDFRA TSGVAVRDNS SNKEEKKASE 120 SSNRLKSCAG SELSLGLKIG GTVNYETSDR LVKTLMACAE AVQQKNLNLA DGLVRDIRIL 180 AVQQSDAKKK VANYFAQALD RRIHETNPHD IVEFSYYTDQ FYETSRYLKV GHFTTNQAIV 240 KAFANYNRVH VIDFSLNKGL QWRALLHDLA LRSGGPPAFR LTKIGPVQPD NSAALQEVEW 300 KLSELADSIG VEFEYREIKV SSLAEVDATI LDIRPSNLEA VAVNFVLELY HLTLSSPGAI 360 EKLLHSIEEM QPKIVTSFRE QAENHNGSVF VDRFNEAWHN YSTMFDFLEK KETAQPNSPN 420 SNLVEEYLGR QIYNIVVGTE LGLRC |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 3e-34 | 158 | 436 | 26 | 304 | Protein SCARECROW |
5b3h_A | 3e-34 | 158 | 436 | 25 | 303 | Protein SCARECROW |
5b3h_D | 3e-34 | 158 | 436 | 25 | 303 | Protein SCARECROW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). Its degradation is not essential for germination. {ECO:0000250, ECO:0000269|PubMed:15347801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_016490697.1 | 1e-145 | PREDICTED: DELLA protein GAI-like | ||||
Swissprot | Q7Y1B6 | 1e-120 | GAI_SOLLC; DELLA protein GAI | ||||
TrEMBL | A0A1S4BP73 | 1e-144 | A0A1S4BP73_TOBAC; DELLA protein GAI-like | ||||
STRING | Solyc10g086380.1.1 | 1e-133 | (Solanum lycopersicum) | ||||
STRING | XP_009590520.1 | 1e-133 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12864 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G01570.1 | 1e-100 | GRAS family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|