PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00888g00410.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family NAC
Protein Properties Length: 322aa    MW: 36989.2 Da    PI: 6.2853
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00888g00410.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.62.3e-40151261111
                       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgy 82 
                               +ppGfrFhPt+eel+++yLkkkv+++k++l +vi+evd++k+ePwd+++k+k     +++wyfFs++dkky+tg+r+nrat++g+
  Peaxi162Scf00888g00410.1  15 VPPGFRFHPTEEELLQYYLKKKVANEKIDL-DVIQEVDLNKLEPWDIQEKCKIgstPQNDWYFFSHKDKKYPTGTRTNRATAAGF 98 
                               69****************************.9***************964444222455************************** PP

                       NAM  83 WkatgkdkevlskkgelvglkktLvfykg 111
                               Wkatg+dk ++s +++ +g++ktL  y+ 
  Peaxi162Scf00888g00410.1  99 WKATGRDKVIYS-NSRRIGMRKTLSIYTH 126
                               ************.9999********9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-449155IPR003441NAC domain
PROSITE profilePS5100540.03215155IPR003441NAC domain
PfamPF023651.6E-2016148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MPDDMSISVN GQSQVPPGFR FHPTEEELLQ YYLKKKVANE KIDLDVIQEV DLNKLEPWDI  60
QEKCKIGSTP QNDWYFFSHK DKKYPTGTRT NRATAAGFWK ATGRDKVIYS NSRRIGMRKT  120
LSIYTHTYCA LKVSNMGMGE LTQEEGWVVC RIFKKKNHFK SFEMISPASQ SVSDTRMGQS  180
MYPNDEGALE QLLQYMRSSC KEENQSNNIS NFHDRFMQLP SLDSPNSSDN SQTYCTNGKF  240
MSEDPKTINF EGGLNNWIAV DRLVASHLNG QTNDLHHDYD QQQYQSNGGG STHEYNHEEC  300
DLWSFPRVPT NDSLCHMSNI PV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-361215714167NO APICAL MERISTEM PROTEIN
1ut4_B2e-361215714167NO APICAL MERISTEM PROTEIN
1ut7_A2e-361215714167NO APICAL MERISTEM PROTEIN
1ut7_B2e-361215714167NO APICAL MERISTEM PROTEIN
3swm_A2e-361215717170NAC domain-containing protein 19
3swm_B2e-361215717170NAC domain-containing protein 19
3swm_C2e-361215717170NAC domain-containing protein 19
3swm_D2e-361215717170NAC domain-containing protein 19
3swp_A2e-361215717170NAC domain-containing protein 19
3swp_B2e-361215717170NAC domain-containing protein 19
3swp_C2e-361215717170NAC domain-containing protein 19
3swp_D2e-361215717170NAC domain-containing protein 19
4dul_A2e-361215714167NAC domain-containing protein 19
4dul_B2e-361215714167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ6869441e-154JQ686944.1 Nicotiana tabacum cultivar SR1 NAC secondary wall thickening promoting factor 3 (NST3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009791966.11e-177PREDICTED: NAC domain-containing protein 43-like
RefseqXP_016450002.11e-177PREDICTED: NAC domain-containing protein 43-like
SwissprotQ84WP61e-97NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A1S3YDD01e-176A0A1S3YDD0_TOBAC; NAC domain-containing protein 43-like
TrEMBLA0A1U7XQR71e-176A0A1U7XQR7_NICSY; NAC domain-containing protein 43-like
STRINGXP_009791966.11e-177(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13424297
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.16e-82NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]