PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00878g00026.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family HD-ZIP
Protein Properties Length: 408aa    MW: 44458.2 Da    PI: 6.716
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00878g00026.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.79.5e-19223277256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ +++keq   Lee F+++++++ ++++ LAk+l+L  rqV vWFqNrRa+ k
  Peaxi162Scf00878g00026.1 223 RKKLRLSKEQSAYLEESFKEHHTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTK 277
                               778899***********************************************98 PP
2HD-ZIP_I/II127.27.3e-41223313192
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rlskeq++ LEesF+e+++L+p++K++la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +
  Peaxi162Scf00878g00026.1 223 RKKLRLSKEQSAYLEESFKEHHTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQ 307
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreelk 92 
                               eLr +lk
  Peaxi162Scf00878g00026.1 308 ELR-ALK 313
                               **9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.8E-18206277IPR009057Homeodomain-like
SuperFamilySSF466891.33E-18215280IPR009057Homeodomain-like
PROSITE profilePS5007117.362219279IPR001356Homeobox domain
SMARTSM003891.8E-16221283IPR001356Homeobox domain
CDDcd000864.31E-16223280No hitNo description
PfamPF000465.0E-16223277IPR001356Homeobox domain
PROSITE patternPS000270254277IPR017970Homeobox, conserved site
SMARTSM003409.1E-26279322IPR003106Leucine zipper, homeobox-associated
PfamPF021836.5E-11279313IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MELGLSLGDT NNTATTTAAA AASKSFFLSK NISTSSSDHI QNHSCKKKRK GLGFCMALGI  60
NSSGTVQEDD DDETPEKSQE NDDDDDLEDD HTSEEGRDNT SLKPVQLDLL PLVPVPRRNL  120
PHQPLHWSSS NGSSENGSSG NGGLPAARGF DVNRLPAAGT MEEVSSPNSV ASSFQMDFGL  180
LKGLGNLIGN KRNSESAGVN DGGEPERASS RASDEDENGL NTRKKLRLSK EQSAYLEESF  240
KEHHTLNPKQ KQALAKQLNL RPRQVEVWFQ NRRARTKLKQ TEVDCEYLKR CCETLTEENR  300
RLHKELQELR ALKTSNPFYM QLPATTLTMC PSCERVASTT SAATAPPITP TGTTTIATTS  360
KAPPTKTTTP TSITTTTSDT IPKAIPFLSR PRFFPFTTTN NPNQSAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221227TRKKLRL
2271279RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617361.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
RefseqXP_016500773.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like
SwissprotP466651e-89HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S4CHX70.0A0A1S4CHX7_TOBAC; homeobox-leucine zipper protein HOX11-like
STRINGXP_009617361.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.18e-81homeobox from Arabidopsis thaliana