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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Peaxi162Scf00848g00319.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family |
MIKC_MADS |
Protein Properties |
Length: 338aa MW: 38815.4 Da PI: 5.0138 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Peaxi162Scf00848g00319.1 | genome | SGN | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
Peaxi162Scf00848g00319.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
68***********************************************8 PP
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2 | K-box | 21.2 | 1.2e-08 | 102 | 184 | 1 | 84 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84
yq+ss+ + +++ e+ qqe+ + k ++e ++r++R + G+ e s+ e q e+ L++ lk++ ++K ++l e+ + q++
Peaxi162Scf00848g00319.1 102 YQASSSPASVDSQIEEFQQEILRYKTQLEDMERQLRMYEGDMCEITSVCEAQYREEILQETLKQVQARK-QVLEENYNSPQEQT 184
6777788889999******************************************************99.56666666555554 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 338 aa
Download sequence Send
to blast |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDVMARY VNLPEHDRGR LHNQEHLQRA LAKLKSETDR TYQASSSPAS VDSQIEEFQQ 120 EILRYKTQLE DMERQLRMYE GDMCEITSVC EAQYREEILQ ETLKQVQARK QVLEENYNSP 180 QEQTTTQQQM DFPAQNVNVV NNVATSDSIT NTSNTFMDWV PHSQRDPHVQ ILNFLDSNGL 240 LPFRDEADQR MDNMLPPTLT QLHNPNVSAV ADHLSPNNRF ENDPPRPTSF EGIIDVNNAP 300 WPPLYPTGND PFPVSQPRER AMLELFLSQL TPVNQDHI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
3mu6_A | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_B | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_C | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
3mu6_D | 1e-15 | 2 | 70 | 1 | 68 | Myocyte-specific enhancer factor 2A |
6c9l_A | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 1e-15 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975443 | 1e-76 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |