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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00840g00121.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MYB_related | ||||||||
Protein Properties | Length: 237aa MW: 27038.4 Da PI: 5.7103 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.6 | 4.6e-16 | 14 | 99 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT.........................................-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.........................................tWktIartmgkgRtlkqcksrwqk 46 rg W+++Ede+l+++ ++G+g +W+ Ia++++ gRt++++k++w++ Peaxi162Scf00840g00121.1 14 RGQWSPDEDEILKNYLLKHGTGgnwitlplragsllslsrhtrqnyviyyliitqvyelfllcRWSIIASKLP-GRTDNDVKNHWNT 99 89***********************************************************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.1E-22 | 5 | 35 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.215 | 9 | 105 | IPR017930 | Myb domain |
SMART | SM00717 | 3.4E-11 | 13 | 103 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.35E-11 | 14 | 102 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.53E-8 | 17 | 99 | No hit | No description |
Pfam | PF00249 | 2.1E-6 | 77 | 99 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-22 | 77 | 108 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MGRTPCCDKN KVKRGQWSPD EDEILKNYLL KHGTGGNWIT LPLRAGSLLS LSRHTRQNYV 60 IYYLIITQVY ELFLLCRWSI IASKLPGRTD NDVKNHWNTK LKKKLLAKNA NPTSSFDESN 120 EVFNTSTPNA LLFMVPKEEE KQAPYQFPFP NMDSAGLSIN TNNIDQKHFP IPSFTQENSK 180 NSGTSSVSFD ETNWFEKGAN DSFEGFPLGF STDEIMDGIW STQQSLFEEI DFPSTFI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009610486.1 | 4e-79 | PREDICTED: transcription factor RAX1-like | ||||
TrEMBL | A0A1U7YE68 | 3e-77 | A0A1U7YE68_NICSY; transcription factor RAX1-like | ||||
STRING | XP_009610486.1 | 2e-78 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15590 | 5 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G23000.1 | 4e-30 | myb domain protein 37 |