PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00814g00013.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family LBD
Protein Properties Length: 285aa    MW: 31275.5 Da    PI: 6.5002
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00814g00013.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260100.71.4e-314107199
                    DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvi 80 
                               +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +P+yG+vg++
  Peaxi162Scf00814g00013.1   4 SCNGCRVLRKGCSENCSIRPCLqwiknPESQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLYEACGRMVNPIYGSVGLL 88 
                               6************************************************************************************ PP

                    DUF260  81 lklqqqleqlkaelallke 99 
                               +++++ql+q ++e++l ++
  Peaxi162Scf00814g00013.1  89 WSGNWQLCQNAVEAVLKGT 107
                               ************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381553.6E-871284IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.7473109IPR004883Lateral organ boundaries, LOB
PfamPF031958.0E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKN PESQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL YEACGRMVNP IYGSVGLLWS GNWQLCQNAV EAVLKGTPIT PIASEVAVNN  120
NGPPLKLPYD IRHVNKDDNN VIKSNDLHRV RTRCRFKRSG ANKSKKENPI CSGSGDEYGH  180
EKVNGSTSHE SSLSHQSEAA AAVGPNVECE SREIESLQLE EMAEVDEDLA EAKAGADDGE  240
IELQLTLGLA PFVTAHDKPK EMKRSEAVNL LDAAGECKME LWLHC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019237559.11e-174PREDICTED: LOB domain-containing protein 41-like
SwissprotQ9M8861e-97LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A1J6KKL11e-173A0A1J6KKL1_NICAT; Lob domain-containing protein 41
STRINGXP_009801662.11e-173(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-92LOB domain-containing protein 41