PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00795g00039.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family Trihelix
Protein Properties Length: 507aa    MW: 54905.6 Da    PI: 6.3573
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00795g00039.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix59.68e-19134220186
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                               +W++  + +L+ea+ e+  +l+rg+l++ +Weev++ ++er +  ++s +qCk+k +nl+kryk ++++ +++   ++s++p+f+
  Peaxi162Scf00795g00039.1 134 EWSDTAIACLLEAYMEKFVQLNRGNLRGRDWEEVAAMVSERCVkqTKSVEQCKNKVDNLKKRYKLERHRIING-GVTTSHWPWFK 217
                               5*************************************8887733679***********************99.556669***** PP

                  trihelix  84 qle 86 
                               q+e
  Peaxi162Scf00795g00039.1 218 QME 220
                               **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.6E-21132222No hitNo description
Gene3DG3DSA:3.40.1160.101.7E-67253500IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B33.03261501IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.01E-52262500IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042541.45E-114264501No hitNo description
PfamPF006968.4E-23265480IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MASCGDDDFS LLADDNPAAV TVTPTTSNPS YHHHSFSHRY KSSSQQIHAP PISACSTKNI  60
SGDEDDDGEG YSDTGFVGVN NPYENETIND NIKRTDREEN ISDNGTPYSS YKRSKTATSS  120
GGGSGGEYRK DREEWSDTAI ACLLEAYMEK FVQLNRGNLR GRDWEEVAAM VSERCVKQTK  180
SVEQCKNKVD NLKKRYKLER HRIINGGVTT SHWPWFKQME QIVGNSVNLK AVTSEEEKYG  240
AAVSGPSGQI NNIKTKSSMG PRWRRVVLKI SGAALAGAAP NTNDPNNLDP KVAMLIAREV  300
SIACRLGIEV AIVVGGRNFF CGDTWVSTTG LDRCTAYQIG MMATMMNSIL LQSALEKLGV  360
QTRVQSAFSM PELAEPYSRQ RAMRHLEKGR VVIFGGIGAG TGNPLFTTDT AAALRASEIN  420
ADALLKGANV EGVFVCDSRN NSVAAEHISF RELVSGGASP LDLMAVTLCE ENAIPVVIFN  480
LHGPGNISRA LCGEQVGTLV DQTGMVS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3nwy_A2e-5726350050279Uridylate kinase
3nwy_B2e-5726350050279Uridylate kinase
3nwy_C2e-5726350050279Uridylate kinase
3nwy_D2e-5726350050279Uridylate kinase
3nwy_E2e-5726350050279Uridylate kinase
3nwy_F2e-5726350050279Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754481e-83HG975448.1 Solanum pennellii chromosome ch09, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019250790.10.0PREDICTED: uncharacterized protein LOC109229713
TrEMBLA0A1S4AJN50.0A0A1S4AJN5_TOBAC; uncharacterized protein LOC107798398
TrEMBLA0A1U7YW420.0A0A1U7YW42_NICSY; uncharacterized protein LOC104248417
STRINGXP_009802965.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87282427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein