PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00771g00214.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

FAR1

Protein Properties

Length: 321aa MW: 37036.5 Da PI: 8.674

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00771g00214.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50	1e-15	36	107	16	90
FAR1 16 kskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 + + +ks+++++i+ ++fvCskeg+r++++ k ++r++ tr gCk l v k++d+kw v +l+++H Hela Peaxi162Scf00771g00214.1 36 IGRVTKSRKDKSIIGQEFVCSKEGFRSKKNLK---SNRPQDITREGCKELLYVLKREDAKWAVCRLVSNHYHELA 107 6678899******************98877...999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.6E-13	36	107	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 321 aa Download sequence Send to blast
MENSNIDEQN EIGSDMNGTT PFVPSSGVEN HKDIYIGRVT KSRKDKSIIG QEFVCSKEGF 60 RSKKNLKSNR PQDITREGCK ELLYVLKRED AKWAVCRLVS NHYHELATPI RSKRKGSEAQ 120 KNLIDLLDDS GDEAIKVYTR KVFNIFEEEF LLSQKCVSEK VEVKDGINIY KVHDLDLASK 180 VAICSWQKFE FMEILCRHVL MAFNKKKIHS LSSCYLLDRW TRNATREKVD DSSNETKKLK 240 PALLFNTIMM KSIGISERAT RLLQLCKELD ELPYELEKDC VEANQVNEKN LELNSCEKSH 300 KITLLDPSRA ATNRRPRSLR I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025883762.1	5e-62	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025886302.1	2e-59	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2G3CXF4	2e-72	A0A2G3CXF4_CAPCH; Uncharacterized protein
STRING	Solyc01g110070.1.1	4e-59	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA645	8	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-15	FAR1-related sequence 5