PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00747g00123.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family B3
Protein Properties Length: 517aa    MW: 58025.2 Da    PI: 5.4361
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00747g00123.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.82.7e-2076177199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+kvlt sd++++  l+l ++ + ++      +++k+ + +l+ +d+ g +W++ + ++++++r++ltkGW++Fv  ++L +gD+
  Peaxi162Scf00747g00123.1  76 FCKVLTASDTNSNWGLTLRRDDVIRCfppldiSKQKPIQ-DLIAKDLYGCEWQFSHVFQGQPRRHLLTKGWRKFVATKRLVAGDS 159
                               99****************************985566664.8******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F +    ++el+v+v+r+
  Peaxi162Scf00747g00123.1 160 VIFLR--GGNGELCVGVRRQ 177
                               ****4..378999****996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-3370191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.97E-2671180IPR015300DNA-binding pseudobarrel domain
CDDcd100171.64E-1974176No hitNo description
SMARTSM010191.5E-1676178IPR003340B3 DNA binding domain
PROSITE profilePS5086311.68876178IPR003340B3 DNA binding domain
PfamPF023621.1E-1776177IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MFTLNIQLKE SADQIVPSFD LPSNIICRVI HIHLMVESDT DEVYARITLF PEKNQSEQTS  60
AEAWCPEPLN SQLHSFCKVL TASDTNSNWG LTLRRDDVIR CFPPLDISKQ KPIQDLIAKD  120
LYGCEWQFSH VFQGQPRRHL LTKGWRKFVA TKRLVAGDSV IFLRGGNGEL CVGVRRQAHQ  180
RYNVGSSLVS SQTVQGVLPV VSHAFATGSL FLVHYQPRTS GCILSLRKYL EPNRETPSNP  240
NLAQIASDDL STNHISVNDL DCDVFSDIFL APHSHFVEST LETNRNGTGC ADILLLLLLD  300
LEGWPESQRE SFPTYPQQPV PEPSMTTSTS VQPTDTFQLM CSYSNPNQPP TEVPSCGGEQ  360
VSWVGYQVAK RCLPILNRVI MRYPSTISGF KAVTGALQSV YLEMLAKLID LLEQTRIGSM  420
ENMDQFQVIK QYLADLKFIG IDISWIETRL EQVDVVFKVE KLIQHQHTLA HGIEETQFIL  480
GQLQEEHGSV TKELEELTPK VGLSLPSKDC SILEGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A6e-76123149282Auxin response factor 1
4ldw_A6e-76123149282Auxin response factor 1
4ldw_B6e-76123149282Auxin response factor 1
4ldx_A8e-76123149282Auxin response factor 1
4ldx_B8e-76123149282Auxin response factor 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009783661.10.0PREDICTED: auxin response factor 1-like
RefseqXP_016464700.10.0PREDICTED: auxin response factor 1-like isoform X1
TrEMBLA0A1S3ZJL50.0A0A1S3ZJL5_TOBAC; auxin response factor 1-like isoform X1
TrEMBLA0A1U7X1W80.0A0A1U7X1W8_NICSY; auxin response factor 1-like
STRINGXP_009783661.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14681810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-75auxin response factor 2