PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00714g00519.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | B3 | ||||||||
Protein Properties | Length: 199aa MW: 23198.6 Da PI: 7.7233 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.8 | 3.8e-13 | 97 | 177 | 14 | 80 |
T-EE--HHH.HTT..............---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS B3 14 grlvlpkkfaeeh..............ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 +r+ +p ++++ ++ +e+s++++++d++g+ ++k++ + + +++vl GW++ vkan+L+ gD+v Peaxi162Scf00714g00519.1 97 SRFFIPTGTCNANilnhlnpeerkkleNQHSERSIEVRVMDPKGNIHKMKFTRWLSLKKFVLNHGWNKLVKANDLQKGDTV 177 6788888888888888888887777775556799*****************99**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03754 | 1.7E-11 | 76 | 167 | IPR005508 | B3 domain-containing protein |
Gene3D | G3DSA:2.40.330.10 | 3.6E-14 | 81 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.1E-15 | 82 | 189 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.67E-14 | 85 | 192 | No hit | No description |
PROSITE profile | PS50863 | 9.686 | 132 | 198 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MTKIRIFGKD FKAIRLFGEW LTVALEKEQE EQETRLILQE DQEAGLMLQE EQEAGVIQRD 60 LPPPNNMYEA IQLAGGSEPV YIGRKKVEQS DIKPDLSRFF IPTGTCNANI LNHLNPEERK 120 KLENQHSERS IEVRVMDPKG NIHKMKFTRW LSLKKFVLNH GWNKLVKAND LQKGDTVDLW 180 HFRISSEPYF AINIIKNQN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009774698.1 | 4e-63 | PREDICTED: putative B3 domain-containing protein At3g49610 | ||||
Refseq | XP_016495804.1 | 4e-63 | PREDICTED: putative B3 domain-containing protein At3g49610 | ||||
TrEMBL | A0A1S4C414 | 9e-62 | A0A1S4C414_TOBAC; putative B3 domain-containing protein At3g49610 | ||||
TrEMBL | A0A1U7W7U3 | 9e-62 | A0A1U7W7U3_NICSY; putative B3 domain-containing protein At3g49610 | ||||
STRING | XP_009774698.1 | 1e-62 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11679 | 11 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05930.1 | 4e-07 | B3 family protein |