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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00710g00416.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | bHLH | ||||||||
Protein Properties | Length: 480aa MW: 53232.5 Da PI: 6.0792 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 43.4 | 6.2e-14 | 302 | 345 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 + Er+RR+ri+++++ Lr l+P+ + K++K++iL A++YI++Lq Peaxi162Scf00710g00416.1 302 ITERKRRNRIKDGLFSLRALVPNiS------KMDKVAILGDAIDYIHELQ 345 68*********************66......******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.9E-18 | 7 | 159 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 15.51 | 295 | 344 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.30E-14 | 297 | 349 | No hit | No description |
SuperFamily | SSF47459 | 5.1E-17 | 297 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-15 | 301 | 350 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 5.7E-17 | 302 | 363 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-11 | 302 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 480 aa Download sequence Send to blast |
MERALELLRP LIDSKNWDYC VVWKLGDDPS RFIEWLGCCC SGANGVDVNV KKENGGKQNF 60 TTLCRDSKVQ HPIRTKACEA LAHFPLSISL YSGIQGEVVT TNEPKWINHA EISNSNFSHI 120 TWQELKGTLV LIPVAGGLVE LYNSKLIYKD QKTIDFIINR FKLGSQGANS SKGCFSAKKD 180 DLALNSFTLQ YTDFASSTPL ISQVSESSPN PSCIEGSSTG SIPSNEVTMC HPSPSDHLSR 240 NVPLSQSIDG YFEHTELQCS GNLSKMEGTD FPLNQENYII SGDVLTMGKK RQRGPYQSKN 300 LITERKRRNR IKDGLFSLRA LVPNISKMDK VAILGDAIDY IHELQENVKL YQTELNEMAA 360 EVSNNESAEV VLSVMSEMSK VTVPTNEKTQ LSINTTKRTR MEVEVNQIGA REFLLKVSGS 420 HKPGGFTQLM EAMNYLELEV VNVSFTTSGG EILSILIAEA NVDRVLEAQK LKSSLIELTS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 287 | 293 | GKKRQRG |
2 | 288 | 307 | KKRQRGPYQSKNLITERKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC188781 | 5e-49 | AC188781.2 Lycopersicon esculentum cv. Heinz 1706, chromosome 5 BAC clone C05SLm0005B15 complete sequence. | |||
GenBank | HG975517 | 5e-49 | HG975517.1 Solanum lycopersicum chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016484583.1 | 0.0 | PREDICTED: transcription factor bHLH90-like isoform X3 | ||||
TrEMBL | A0A1S4B713 | 0.0 | A0A1S4B713_TOBAC; transcription factor bHLH90-like isoform X3 | ||||
STRING | XP_009768125.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9929 | 22 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10610.1 | 2e-58 | bHLH family protein |