PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00703g00011.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 209aa MW: 24043.2 Da PI: 9.3346 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 88.2 | 4.3e-28 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 ri+n++ rqvtfskRrng+lKKA+EL +LCdaev +iifsstgklye+ Peaxi162Scf00703g00011.1 10 RIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGLIIFSSTGKLYEFT 58 8***********************************************7 PP | |||||||
2 | K-box | 15.8 | 6e-07 | 78 | 115 | 9 | 46 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesL 46 + ++ ++l++e++ +++++ Lq+++R+llGe+L L Peaxi162Scf00703g00011.1 78 QLHNPVSELKREAEISRQQLQDLQENHRQLLGEELCGL 115 4445567899999999******************9766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 31.833 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 2.5E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 5.08E-45 | 2 | 78 | No hit | No description |
SuperFamily | SSF55455 | 1.12E-32 | 2 | 81 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-28 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-28 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-28 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MGRGKIVIRR IDNSTSRQVT FSKRRNGLLK KAKELAILCD AEVGLIIFSS TGKLYEFTNT 60 SMKSVIERYN KTKDEHQQLH NPVSELKREA EISRQQLQDL QENHRQLLGE ELCGLGEQLL 120 KDEIQELTRK GTMIHQENLE LYKKVNLIQQ ENAELYKKAY GTRDSSAMNG NSNGPYRFTV 180 SREVHGPIHL QLSQPEPQNF ETRARTSDS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 3e-21 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6bz1_B | 3e-21 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6bz1_C | 3e-21 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
6bz1_D | 3e-21 | 1 | 83 | 1 | 83 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975441 | 1e-56 | HG975441.1 Solanum pennellii chromosome ch02, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016445758.1 | 1e-131 | PREDICTED: MADS-box transcription factor 23-like isoform X1 | ||||
Swissprot | Q6EP49 | 2e-86 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | A0A1S3Y0N1 | 1e-129 | A0A1S3Y0N1_TOBAC; MADS-box transcription factor 23-like isoform X1 | ||||
STRING | XP_009786108.1 | 1e-130 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA679 | 20 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37940.1 | 6e-72 | AGAMOUS-like 21 |
Publications ? help Back to Top | |||
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