PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Peaxi162Scf00684g00019.1

Organism

Petunia axillaris

Taxonomic ID

33119

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia

Family

bHLH

Protein Properties

Length: 375aa MW: 41165 Da PI: 7.9956

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Peaxi162Scf00684g00019.1	genome	SGN	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.1	9e-10	79	128	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r++ + rE+ RRdr+N+ f eL l ++ +K++Ka+iL +++ +k+L Peaxi162Scf00684g00019.1 79 RKVQKADREKLRRDRLNEQFTELGNTLDPD----RPKNDKASILSDTIQVLKDL 128 5677889******************997....79*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	2.6E-12	78	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.338	78	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	5.5E-13	78	144	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-7	79	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.50E-7	79	132	No hit	No description
SMART	SM00353	2.2E-7	84	134	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence Send to blast
MDELKCKTWY QSDPSLADST QLPSDSRPLT TRPPPSGECS NKVASTFANQ LLVLISAVLL 60 THSTKQKPEA ELKDSVAARK VQKADREKLR RDRLNEQFTE LGNTLDPDRP KNDKASILSD 120 TIQVLKDLTA QVGRLKSEYA ALTDESRELT QEKTDIREEK ASLKSDIESL NAQYQQRLRT 180 MYPWAGMDHS MVMHPPSYSY PVPVPIPTGP IPMHPSLQHY PFFGNQNPAA VPNPCPPFVP 240 YMAPSTLGEQ QPTQQMSPVM QPSSRIHGSG GQDSRKKLSD QGESRTEKSE GSNEVATDLE 300 LKTPGSASEQ DVSPGQTSRK LSRKDNSLTD GSSSSRCSSS HSVHAISSNS VVRGTKDSTL 360 WTLLRGLAQA RAGVP

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence Send to blast

MDELKCKTWY QSDPSLADST QLPSDSRPLT TRPPPSGECS NKVASTFANQ LLVLISAVLL  60
THSTKQKPEA ELKDSVAARK VQKADREKLR RDRLNEQFTE LGNTLDPDRP KNDKASILSD  120
TIQVLKDLTA QVGRLKSEYA ALTDESRELT QEKTDIREEK ASLKSDIESL NAQYQQRLRT  180
MYPWAGMDHS MVMHPPSYSY PVPVPIPTGP IPMHPSLQHY PFFGNQNPAA VPNPCPPFVP  240
YMAPSTLGEQ QPTQQMSPVM QPSSRIHGSG GQDSRKKLSD QGESRTEKSE GSNEVATDLE  300
LKTPGSASEQ DVSPGQTSRK LSRKDNSLTD GSSSSRCSSS HSVHAISSNS VVRGTKDSTL  360
WTLLRGLAQA RAGVP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019265193.1	1e-180	PREDICTED: transcription factor bHLH121-like
Swissprot	Q9LT23	2e-90	BH121_ARATH; Transcription factor bHLH121
TrEMBL	A0A314L303	1e-178	A0A314L303_NICAT; Transcription factor bhlh121 (Fragment)
STRING	XP_009783164.1	1e-178	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5456	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19860.2	1e-84	bHLH family protein

Publications ? help Back to Top
Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]