PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Peaxi162Scf00683g00114.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 247aa MW: 28279.3 Da PI: 9.7309 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 35.8 | 1e-11 | 6 | 45 | 5 | 44 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 + r+ tf kR++g+ KK +E +LC+++ ++i++++++ Peaxi162Scf00683g00114.1 6 KEKARNATFKKRKEGLKKKLHEFTTLCNVNGCMIMYGPKQ 45 5567999******************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.2E-4 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 11.732 | 1 | 44 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.12E-12 | 2 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.6E-13 | 5 | 45 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MELMSKEKAR NATFKKRKEG LKKKLHEFTT LCNVNGCMIM YGPKQSNGSN SEPEIWTNNS 60 TTTKSSQEEE IQNLIDEYKK SSLVTRSTKT FGLSDYFTDR NKNIEKELIR LRKMNMEKKY 120 PCWLKFMDHF SEFKLRELIS FLDGKVEKVK SRIDFLKGNM NIVNEYFIKA ASEGMELSRL 180 TNFSDNVSPL MVQGGSELGG FMNNHYEQAI DPYWQFNGAT SFSGGATAFL PIGSKRKADR 240 AFLAALA |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019255836.1 | 1e-100 | PREDICTED: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A1J6IR27 | 6e-99 | A0A1J6IR27_NICAT; Agamous-like mads-box protein agl80 | ||||
STRING | XP_009774508.1 | 5e-99 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2457 | 22 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58890.1 | 2e-12 | AGAMOUS-like 82 |