PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00662g00021.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | ARF | ||||||||
Protein Properties | Length: 576aa MW: 62853.2 Da PI: 5.9893 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71 | 1.5e-22 | 121 | 223 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegD 78 f+k+ltpsd+++ g +++p+ +a+++ ++ + lt++d +g We+++iyr++++r++lt+GW++Fv+++++ +gD Peaxi162Scf00662g00021.1 121 FVKILTPSDANNGGGFSVPRFCADSIfprlnfaADPPVQ--NLTIRDIHGALWEFRHIYRGTPRRHLLTTGWSKFVNSKKIVAGD 203 89*********************999*****97666666..699***************************************** PP EEEEEE-SS.SEE..EEEEE-S CS B3 79 fvvFkldgr.sefelvvkvfrk 99 + vF ++ +++el+v+v+r+ Peaxi162Scf00662g00021.1 204 SAVFI--RKlKTGELYVGVRRA 223 *****..56699********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 8.4E-32 | 112 | 232 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.57E-28 | 115 | 230 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.46E-20 | 120 | 222 | No hit | No description |
SMART | SM01019 | 4.0E-19 | 121 | 224 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.59 | 121 | 224 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-21 | 121 | 223 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.1E-25 | 259 | 342 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0010208 | Biological Process | pollen wall assembly | ||||
GO:0048830 | Biological Process | adventitious root development | ||||
GO:0052543 | Biological Process | callose deposition in cell wall | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 576 aa Download sequence Send to blast |
MDNNQYMSDS AAMPPPSTGE DVDPTIWRSI AGNSVQIPSV GSRVYYFPQG HAEHATCASP 60 ILLSAVIPPF IPCRVLSVRF LADSVTDEAF AKIVLLPINQ SDDDVVALNA AADDENDVVS 120 FVKILTPSDA NNGGGFSVPR FCADSIFPRL NFAADPPVQN LTIRDIHGAL WEFRHIYRGT 180 PRRHLLTTGW SKFVNSKKIV AGDSAVFIRK LKTGELYVGV RRATRGNERW NSPVLKTEQL 240 GSCWRTGQGR VPMEAIVDAA EMATRGLAFE VTCYPRAGWA DFVVRAEAVE ASSTVFWTVG 300 VRVKMAVETE DSSRTACFQG TVSSVNLPES GPWRGSPWRM LQITWDEPEV LQNAKRVNPW 360 QVECIVPTPQ VHSGFPPSKK IKLPNGLLPD GEGKHFFPMT GLSNPMIGLC SPLLGNYTSF 420 PAGMQGARQN QICVSGLSNV KSNNNLGSCT DNSIDEEIKP KLESVSTKLN IGSSFSDNLS 480 PDSHSSVHFD NELVIKPGSS SFTKVRVNSF QLFGKLIHVE TVEGGFDAFG CSDSDCIGVF 540 KEIDGALKSN ISLNKPYIEL FDSLDVQHRS CEACSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 5e-69 | 26 | 363 | 23 | 353 | Auxin response factor 1 |
4ldy_B | 5e-69 | 26 | 363 | 23 | 353 | Auxin response factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009791106.1 | 0.0 | PREDICTED: auxin response factor 17 | ||||
Refseq | XP_016439970.1 | 0.0 | PREDICTED: auxin response factor 17-like | ||||
Swissprot | Q84WU6 | 1e-170 | ARFQ_ARATH; Auxin response factor 17 | ||||
TrEMBL | A0A1S3XJ26 | 0.0 | A0A1S3XJ26_TOBAC; Auxin response factor | ||||
TrEMBL | A0A1U7XNB2 | 0.0 | A0A1U7XNB2_NICSY; Auxin response factor | ||||
STRING | XP_009791106.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA9560 | 19 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G77850.1 | 1e-167 | auxin response factor 17 |