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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00648g00222.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | AP2 | ||||||||
Protein Properties | Length: 395aa MW: 43815.5 Da PI: 5.5826 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.3 | 6.6e-17 | 55 | 105 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + + +Wv+e+r+p +k+ r++lg++ tae+Aa+a++ a+ +l+g Peaxi162Scf00648g00222.1 55 PVYRGVRKRN-SDKWVCEVREP---NKKSRIWLGTYPTAEMAARAHDVAAIALRG 105 68*****888.7******9998...347*************************98 PP | |||||||
2 | AP2 | 54.5 | 2.9e-17 | 235 | 285 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr ++ +g+Wv+e+r+p +k+ r++lg++ tae+Aa+a + a+ +l+g Peaxi162Scf00648g00222.1 235 PVYRGVRKRS-SGKWVCEVREP---NKKSRIWLGTYPTAEMAARANDVAAIALRG 285 68*****988.7******9998...347*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.1E-12 | 55 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-28 | 56 | 119 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.852 | 56 | 113 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-20 | 56 | 115 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.7E-31 | 56 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.25E-29 | 57 | 115 | No hit | No description |
Pfam | PF00847 | 7.1E-13 | 235 | 285 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-29 | 236 | 299 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.944 | 236 | 293 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.1E-20 | 236 | 295 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-30 | 236 | 295 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-8 | 237 | 248 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.49E-29 | 237 | 295 | No hit | No description |
PRINTS | PR00367 | 1.7E-8 | 259 | 275 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 395 aa Download sequence Send to blast |
MDIFQSYSSD QLLESSSHSD NSSCINNISD EEVILASNNP KKRAGRKKFT ETRHPVYRGV 60 RKRNSDKWVC EVREPNKKSR IWLGTYPTAE MAARAHDVAA IALRGRSACL NFADSAWKLP 120 IPASSDPKDI QKTAAEAAEA FRPLETAGEE SKEESTTPET PPKSKFFMDE EALFDMPGLL 180 ASMAEGLMLP PPQCSEVGDH FMEADADMPL WKVMLASNNP KKRAGRKKFT ETRHPVYRGV 240 RKRSSGKWVC EVREPNKKSR IWLGTYPTAE MAARANDVAA IALRGRSACL NFADSAWKLP 300 IPTSTDAKDI QKAAAEAAEA FRPLESAGEE SKEESTTPET PPKSKFFMDE EALFDMPALL 360 ASMAEGLMLP PPQCSEVGDH FMEADGDVPL WNYSF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-12 | 234 | 292 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF211531 | 1e-110 | AF211531.1 Nicotiana tabacum Avr9/Cf-9 rapidly elicited protein 111B (ACRE111B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019233533.1 | 1e-104 | PREDICTED: dehydration-responsive element-binding protein 1A-like | ||||
Swissprot | Q9FJ93 | 8e-71 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | A0A3Q7FF31 | 1e-177 | A0A3Q7FF31_SOLLC; Uncharacterized protein | ||||
STRING | XP_009784267.1 | 1e-102 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA263 | 24 | 183 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 1e-67 | C-repeat-binding factor 4 |
Publications ? help Back to Top | |||
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