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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00628g00028.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 256aa MW: 29039.6 Da PI: 8.3282 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 54.6 | 1.8e-17 | 109 | 163 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++ keq +Le+ F+++++++ +++++LA++l+L rqV vWFqNrRa+ k Peaxi162Scf00628g00028.1 109 RKKLRLAKEQSAVLEDSFKEHSTLNSKQKRDLATRLRLRPRQVEVWFQNRRARTK 163 6778899**********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 118.2 | 4.4e-38 | 109 | 198 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 +kk+rl+keq+++LE+sF+e+++L++++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e L+++y+ lk+en+rL+ke + Peaxi162Scf00628g00028.1 109 RKKLRLAKEQSAVLEDSFKEHSTLNSKQKRDLATRLRLRPRQVEVWFQNRRARTKLKQTEVDCEILRKCYEDLKDENRRLNKELQ 193 69*********************************************************************************** PP HD-ZIP_I/II 86 eLreel 91 eL+ +l Peaxi162Scf00628g00028.1 194 ELK-SL 198 **9.44 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.471 | 105 | 165 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.14E-16 | 107 | 174 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.2E-14 | 107 | 169 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 7.6E-15 | 109 | 163 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-16 | 109 | 163 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.91E-13 | 109 | 166 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 140 | 163 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 4.1E-10 | 165 | 198 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 6.2E-17 | 165 | 208 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MIYNTSLSLS LGSGGSSTTP DSIQLHQHNN KRKLSTHEQE LLDINPLPSL TLGISSSSVS 60 VAVSSFSNSS VKRELRETSL EEEVEEFDTN KVIFSQKLDD HDEDQFGTRK KLRLAKEQSA 120 VLEDSFKEHS TLNSKQKRDL ATRLRLRPRQ VEVWFQNRRA RTKLKQTEVD CEILRKCYED 180 LKDENRRLNK ELQELKSLKM AAPFRLQLSA ATLSMCPSCE RTYGNGDNST NISFAIGDQK 240 PHFYGPFTNP SAALLS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 113 | TRKKLRL |
2 | 157 | 165 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016483184.1 | 1e-124 | PREDICTED: homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46604 | 4e-69 | HAT22_ARATH; Homeobox-leucine zipper protein HAT22 | ||||
TrEMBL | A0A1S4B2W3 | 1e-123 | A0A1S4B2W3_TOBAC; homeobox-leucine zipper protein HAT22-like | ||||
STRING | XP_009783420.1 | 1e-121 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA290 | 24 | 186 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 2e-66 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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