PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peaxi162Scf00620g00710.1
Organism
Petunia axillaris
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
Family TALE
Protein Properties Length: 314aa    MW: 35697.2 Da    PI: 6.848
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peaxi162Scf00620g00710.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.49.9e-082632962154
                               HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                  Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                               k +yp+++++++L +++gL+ +q+ +WF N+R +
  Peaxi162Scf00620g00710.1 263 KWPYPTEDDKAKLVEETGLQLKQINNWFINQRKR 296
                               469*****************************87 PP
2ELK26.21.8e-09217238122
                       ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                               ELK +L++++++++ ++++E++
  Peaxi162Scf00620g00710.1 217 ELKIELKQGFRSRIEDVREEIL 238
                               9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.1E-194791IPR005540KNOX1
PfamPF037905.4E-174990IPR005540KNOX1
SMARTSM012561.4E-24108163IPR005541KNOX2
PfamPF037913.0E-19111162IPR005541KNOX2
PROSITE profilePS512139.184217237IPR005539ELK domain
PROSITE profilePS5007111.677237300IPR001356Homeobox domain
SMARTSM003891.4E-10239304IPR001356Homeobox domain
SuperFamilySSF466894.28E-16239304IPR009057Homeodomain-like
CDDcd000861.01E-11240301No hitNo description
Gene3DG3DSA:1.10.10.607.6E-25244302IPR009057Homeodomain-like
PfamPF059201.1E-17257296IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010089Biological Processxylem development
GO:0010192Biological Processmucilage biosynthetic process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
GPPDHQKLNI ISFKKMQEQG IGLMGSNGLG GIGHDVSSMV ITDDYSRQLK GEIATHPLYE  60
QLLSAHVACL RVATPIDQLP LIDAQLSQSH HLLRSYAASQ QQQQQPVHSF SPHDRQELDN  120
FLAQYLLVLC SFKEQLQQHV RVHAVEAVMA CREIEQNLQA LTGATLGEGS GATMSDDEDE  180
LQMDFSLDQS GGDAHDLMGF GLPTESERSL MERVRQELKI ELKQGFRSRI EDVREEILRK  240
RRAGKLPGDT TTVLKNWWQQ HSKWPYPTED DKAKLVEETG LQLKQINNWF INQRKRNWHS  300
NSQSVTSLKS KRKR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12240296864Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293313RKRNWHSNSQSVTSLKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in secondary cell wall biosynthesis. {ECO:0000269|PubMed:15980264}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ4776900.0KJ477690.1 Solanum tuberosum class II knox protein (HOX2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009617782.10.0PREDICTED: homeobox protein HD1
RefseqXP_016456715.10.0PREDICTED: homeobox protein HD1-like
SwissprotQ9FPQ81e-169KNAT7_ARATH; Homeobox protein knotted-1-like 7
TrEMBLA0A1S3YX940.0A0A1S3YX94_TOBAC; homeobox protein HD1-like
STRINGXP_009617782.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67732329
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62990.11e-167KNOTTED-like homeobox of Arabidopsis thaliana 7
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. He JB, et al.
    KNAT7 positively regulates xylan biosynthesis by directly activating IRX9 expression in Arabidopsis.
    J Integr Plant Biol, 2018. 60(6): p. 514-528
    [PMID:29393579]