PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Peaxi162Scf00620g00027.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia
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Family | GRF | ||||||||
Protein Properties | Length: 209aa MW: 23481.8 Da PI: 8.9492 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 71 | 1.4e-22 | 123 | 166 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 +aep+rCrRtDGKkWRCs+ v++++k+CE+H+hrgr+ +rk+++ Peaxi162Scf00620g00027.1 123 EAEPRRCRRTDGKKWRCSKGVVQNHKYCEKHMHRGRHHTRKHVK 166 58****************************************97 PP | |||||||
2 | QLQ | 43.8 | 7.8e-16 | 54 | 88 | 3 | 37 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 FT Q q+L++Q +yKy+ a++PvP++L+ +i+k Peaxi162Scf00620g00027.1 54 FTFLQRQELEQQFIIYKYIEAGLPVPSHLIIPICK 88 9999*****************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 4.9E-4 | 52 | 88 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.55 | 53 | 88 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 5.1E-12 | 54 | 87 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 23.422 | 123 | 167 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.5E-17 | 124 | 165 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 209 aa Download sequence Send to blast |
MYSLSRFQAV YLGLVTYVSN GDGLLELGLN LELSQHGGNH ECCYSKFITS GHGFTFLQRQ 60 ELEQQFIIYK YIEAGLPVPS HLIIPICKSI ACSFKGLHDS IRQNCPNSMG YGSLCLDFKS 120 GTEAEPRRCR RTDGKKWRCS KGVVQNHKYC EKHMHRGRHH TRKHVKPASS NMQLSSSTSK 180 SISTTMELGQ VHQISELDAT SFSIALPIN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016553045.1 | 7e-71 | PREDICTED: growth-regulating factor 12-like isoform X1 | ||||
Swissprot | Q6AWX7 | 1e-42 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A1U8FBD8 | 2e-69 | A0A1U8FBD8_CAPAN; growth-regulating factor 12-like isoform X1 | ||||
STRING | XP_009586881.1 | 5e-70 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA14471 | 9 | 9 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 8e-32 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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